View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6551_low_6 (Length: 461)

Name: NF6551_low_6
Description: NF6551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6551_low_6
NF6551_low_6
[»] chr3 (15 HSPs)
chr3 (24-218)||(8349969-8350164)
chr3 (24-167)||(8252867-8253010)
chr3 (80-182)||(8260574-8260676)
chr3 (84-156)||(8352758-8352830)
chr3 (282-327)||(8349624-8349669)
chr3 (80-171)||(8265551-8265642)
chr3 (96-170)||(8334018-8334093)
chr3 (80-142)||(8356339-8356401)
chr3 (80-171)||(8258478-8258569)
chr3 (30-80)||(8356419-8356469)
chr3 (29-75)||(8258592-8258638)
chr3 (30-80)||(8360592-8360642)
chr3 (24-73)||(8334134-8334183)
chr3 (80-139)||(8360515-8360574)
chr3 (24-80)||(8352852-8352908)
[»] chr1 (1 HSPs)
chr1 (292-416)||(44799682-44799806)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 6e-78; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 8350164 - 8349969
Alignment:
Q  24 ggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtcaagagaaatcaaagaggaaggaaaaatcaaagggagctccgattg 123  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  8350164 ggtccttcttcaaactcatcttctcaagtttctgataatgctgaaaattcatgtcaagagaaatcaaagaggaaggaaaaatcaaagggagctccaatta 8350065  T
Q  124 tagtttcttatttccctgttaactattatccctcgcgcttgtagtcatgtagtattaatttacatctgctactt-atcaagaagagtgtaatcaac 218  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| | | |||||||||||||||||||| || |  |||||||||||||||    
T  8350064 tagtttcttatttccctgttaactattatccctcacgcttgtagtcatgcaatgttaatttacatctgctacttaattatcaagagtgtaatcaac 8349969  T

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Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 8253010 - 8252867
Alignment:
Q  24 ggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtcaagagaaatcaaagaggaaggaaaaatcaaagggagctccgattg 123  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  8253010 ggtccttcttcaaactcatcttctcaagtttctgataatgctgaaaattcatgtcaagagaaaccaaagaggaaggaaaaatcaaagggagctccaattg 8252911  T
Q  124 tagtttcttatttccctgttaactattatccctcgcgcttgtag 167  Q
     ||||||||||||| |||||||| ||| || ||| |||||||||    
T  8252910 cagtttcttatttctctgttaacaattgtctctcacgcttgtag 8252867  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 8260676 - 8260574
Alignment:
Q  80 agagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcatgtagtatt 179  Q
    |||||||  |||||| || |||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| ||| || ||||||||||| ||||||    
T  8260676 agagaaacaaaagagcaaagaaaaatcaaagagagctccaattgtagtttcttatttccctgttaactcttatctctcacgtttgtagtcatgcagtatt 8260577  T
Q  180 aat 182  Q
    |||    
T  8260576 aat 8260574  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 8352830 - 8352758
Alignment:
Q  84 aaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccct 156  Q
    |||| |||||| ||||||||||| || |||||| | |||||||||||||||||||||||||||||||||||||    
T  8352830 aaattaaagagaaaggaaaaatctaatggagcttcaattgtagtttcttatttccctgttaactattatccct 8352758  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 282 - 327
Target Start/End: Complemental strand, 8349669 - 8349624
Alignment:
Q  282 ttcaatgattggttgcttgcggcacaagaatctggttcagcttaaa 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8349669 ttcaatgattggttgcttgcggcacaagaatctggttcagcttaaa 8349624  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 8265642 - 8265551
Alignment:
Q  80 agagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcat 171  Q
    |||||||  |||||| ||||||||||||||||||||||| |||||||| | | ||||||||| ||||| ||||| ||| || ||||||||||    
T  8265642 agagaaacaaaagagtaaggaaaaatcaaagggagctccaattgtagtatatcatttccctgctaactcttatctctctcgtttgtagtcat 8265551  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 8334093 - 8334018
Alignment:
Q  96 aaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattat-ccctcgcgcttgtagtca 170  Q
    |||||||||||||| |||| ||| |||||||||||||||||||  |||||||||||| ||||| ||||||||||||    
T  8334093 aaggaaaaatcaaaaggagttccaattgtagtttcttatttcctcgttaactattatcccctcacgcttgtagtca 8334018  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 8356401 - 8356339
Alignment:
Q  80 agagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgt 142  Q
    ||||||| ||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||    
T  8356401 agagaaaccaaagagcaaggaaaaatcaatgggagctccaattgtagttccttatttccctgt 8356339  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 8258569 - 8258478
Alignment:
Q  80 agagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcat 171  Q
    |||||||  |||||| ||||||||||||||||||||||| |||||||| | | ||||||||  ||||| ||||| ||| || ||||||||||    
T  8258569 agagaaacaaaagagtaaggaaaaatcaaagggagctccaattgtagtatatcatttccctactaactcttatctctcacgtttgtagtcat 8258478  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 8356469 - 8356419
Alignment:
Q  30 tcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtcaa 80  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||| ||||    
T  8356469 tcttcaaactcatcatctcaagtttctgattatgctcaaaattcatctcaa 8356419  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 8258638 - 8258592
Alignment:
Q  29 ttcttcaaactcatcatctcaagtttctgataatgctgaaaattcat 75  Q
    ||||||||||||||||||||||||||||||| ||| |||||| ||||    
T  8258638 ttcttcaaactcatcatctcaagtttctgattatgatgaaaaatcat 8258592  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 8360642 - 8360592
Alignment:
Q  30 tcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtcaa 80  Q
    |||||||||| ||||||||||||||||||| ||| ||||||||||| ||||    
T  8360642 tcttcaaacttatcatctcaagtttctgattatgttgaaaattcatctcaa 8360592  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 8334183 - 8334134
Alignment:
Q  24 ggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattc 73  Q
    |||||||||||||||||||| || ||||||| ||| ||||||||||||||    
T  8334183 ggtccttcttcaaactcatcttcacaagtttatgagaatgctgaaaattc 8334134  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 8360574 - 8360515
Alignment:
Q  80 agagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccc 139  Q
    ||||||| ||||||  |||||||||||||  |||||||| ||||||||| ||||||||||    
T  8360574 agagaaaccaaagatcaaggaaaaatcaataggagctccaattgtagttacttatttccc 8360515  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 8352908 - 8352852
Alignment:
Q  24 ggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtcaa 80  Q
    ||||||||||| |||||||| |||||||||| |||| ||| |||||| |||| ||||    
T  8352908 ggtccttcttcgaactcatcttctcaagtttatgattatgatgaaaaatcatctcaa 8352852  T

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Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 292 - 416
Target Start/End: Original strand, 44799682 - 44799806
Alignment:
Q  292 ggttgcttgcggcacaagaatctggttcagcttaaaggacagtgttgtgaagggaatgaactggttttggtttatgagtatttaccatatggaagccttc 391  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||     
T  44799682 ggttgcttgcggcacaagaatctggttcagcttaaagggtggtgttgtgaagggaatgaattggttttggtttatgagtatctaccaaatggaagccttg 44799781  T
Q  392 ataaagttcttcatagaaatttaag 416  Q
    |||||||||| ||||| ||||||||    
T  44799782 ataaagttctgcataggaatttaag 44799806  T

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