View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6551_low_9 (Length: 327)
Name: NF6551_low_9
Description: NF6551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6551_low_9 |
 | |
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| [»] chr1 (9 HSPs) |
| |
|
| [»] scaffold0312 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 949762 - 949436
Alignment:
| Q |
1 |
atgatcctgtgggaggatgtgacaaataggaacagtccctggttgaattttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
949762 |
atgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtg |
949663 |
T |
|
| Q |
101 |
tgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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|
| T |
949662 |
tgacaaacaacaatagttttaaccatgtttccatcaacaccttccaagggcacagagtaaacttcggttgaatcagttttatgacagtaaaaaactgtgt |
949563 |
T |
|
| Q |
201 |
aagggtaattctctttgtgacacacaatagtattgttcttctcacccaatttattcactccttttgctataacatattgttgcaaaccattactattttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
949562 |
aagggtaattctctttgtgacacacaatagttttgttcttctcacccaatttattcactccttttgctataacatattgttgcaaaccattactattttt |
949463 |
T |
|
| Q |
301 |
atccacttctgtggaaatagcttcaac |
327 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
949462 |
atccacttctgtggaaatagcttcaac |
949436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 972043 - 971717
Alignment:
| Q |
1 |
atgatcctgtgggaggatgtgacaaataggaacagtccctggttgaattttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
972043 |
atgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgtttaggattccattctgatgtatcagtg |
971944 |
T |
|
| Q |
101 |
tgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcat |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
971943 |
tgacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcat |
971844 |
T |
|
| Q |
201 |
aagggtaattctctttgtgacacacaatagtattgttcttctcacccaatttattcactccttttgctataacatattgttgcaaaccattactattttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
971843 |
aagggtaattctctttgtgacacacaatagttttgttcttctcacccaatttattcactccttttgctataacatattgttgcaaaccattactattttt |
971744 |
T |
|
| Q |
301 |
atccacttctgtggaaatagcttcaac |
327 |
Q |
| |
|
|||||||||||| |||| ||||||||| |
|
|
| T |
971743 |
atccacttctgttgaaacagcttcaac |
971717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 942773 - 942447
Alignment:
| Q |
1 |
atgatcctgtgggaggatgtgacaaataggaacagtccctggttgaattttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
942773 |
atgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgtttaggattccattctgatgtatcagtg |
942674 |
T |
|
| Q |
101 |
tgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcat |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
942673 |
tgacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcat |
942574 |
T |
|
| Q |
201 |
aagggtaattctctttgtgacacacaatagtattgttcttctcacccaatttattcactccttttgctataacatattgttgcaaaccattactattttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
942573 |
aagggtaattctctttgtgacacacaatagttttgttcttctcacccaatttcttcactccttttgctattacatattgttgcaaaccattactattttt |
942474 |
T |
|
| Q |
301 |
atccacttctgtggaaatagcttcaac |
327 |
Q |
| |
|
|||||||||||| |||| ||||||||| |
|
|
| T |
942473 |
atccacttctgttgaaacagcttcaac |
942447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 960734 - 960408
Alignment:
| Q |
1 |
atgatcctgtgggaggatgtgacaaataggaacagtccctggttgaattttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
960734 |
atgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgtttaggattccattctgatgtatcagtg |
960635 |
T |
|
| Q |
101 |
tgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcat |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
960634 |
tgacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcat |
960535 |
T |
|
| Q |
201 |
aagggtaattctctttgtgacacacaatagtattgttcttctcacccaatttattcactccttttgctataacatattgttgcaaaccattactattttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
960534 |
aagggtaattctctttgtgacacacaatagttttgttcttctcacccaatttcttcactccttttgctattacatattgttgcaaaccattactattttt |
960435 |
T |
|
| Q |
301 |
atccacttctgtggaaatagcttcaac |
327 |
Q |
| |
|
|||||||||||| |||| ||||||||| |
|
|
| T |
960434 |
atccacttctgttgaaacagcttcaac |
960408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 936853 - 936569
Alignment:
| Q |
1 |
atgatcctgtgggaggatgtgacaaataggaacagtccctggttgaattttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtg |
100 |
Q |
| |
|
||||||||| || |||| |||||||| |||||||| || ||||||| ||||||||||||||||||||||||||||| ||||||| ||| ||||||||| |
|
|
| T |
936853 |
atgatcctgaggaaggaagtgacaaactggaacagttccaggttgaacattgagcacttgaaaagccaaatgtttaggattccattgtgaagtatcagtg |
936754 |
T |
|
| Q |
101 |
tgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcat |
200 |
Q |
| |
|
||||| ||| ||| || |||||| | |||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
936753 |
tgacacacagcaacagctttaactctacttccatcaacaccttccaaaggcacagagtaaactttagttgaatcagttttatgacagtaaaaaactgcat |
936654 |
T |
|
| Q |
201 |
aagggtaattctctttgtgacacacaatagtattgttcttctcacccaatttattcactccttttgctataacatattgttgcaa |
285 |
Q |
| |
|
|||||||| |||||||||||||||| | || || ||||| || |||||||| ||||| |||||||| || ||||||| |||||| |
|
|
| T |
936653 |
aagggtaactctctttgtgacacactacagctttattcttttctcccaatttcttcacaccttttgccattacatattcttgcaa |
936569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 419505 - 419765
Alignment:
| Q |
1 |
atgatcctgtgggaggatgtgacaaataggaacagtccctggttgaattttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtg |
100 |
Q |
| |
|
|||||||| || |||| |||||||| ||||||||||| ||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
419505 |
atgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgatgtatcagtg |
419604 |
T |
|
| Q |
101 |
tgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcat |
200 |
Q |
| |
|
||||| ||| |||||| |||||| || |||||||| |||| || || |||||||||||| ||| ||||| ||| ||||| ||||||||||| ||||||| |
|
|
| T |
419605 |
tgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaaacactgcat |
419704 |
T |
|
| Q |
201 |
aagggtaattctctttgtgacacacaatagtattgttcttctcacccaatttattcactcc |
261 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||| |
|
|
| T |
419705 |
aagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactcc |
419765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 975656 - 975396
Alignment:
| Q |
1 |
atgatcctgtgggaggatgtgacaaataggaacagtccctggttgaattttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtg |
100 |
Q |
| |
|
|||||||| || |||| |||||||| ||||||||||| ||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
975656 |
atgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgatgtatcagtg |
975557 |
T |
|
| Q |
101 |
tgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcat |
200 |
Q |
| |
|
||||| ||| |||||| |||||| || |||||||| |||| || || |||||||||||| ||| ||||| ||| ||||| ||||||||||| ||||||| |
|
|
| T |
975556 |
tgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaaacactgcat |
975457 |
T |
|
| Q |
201 |
aagggtaattctctttgtgacacacaatagtattgttcttctcacccaatttattcactcc |
261 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||| |
|
|
| T |
975456 |
aagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactcc |
975396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 14 - 289
Target Start/End: Complemental strand, 910084 - 909812
Alignment:
| Q |
14 |
aggatgtgacaaataggaacagtccctggttgaattttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaacaacaa |
113 |
Q |
| |
|
|||||||| |||| |||| ||| ||| |||||| |||||||||||||||||||||||||||| || |||||| ||| ||||||| ||| |||| | ||| |
|
|
| T |
910084 |
aggatgtggcaaactggaaaagttccttgttgaactttgagcacttgaaaagccaaatgtttaaggctccattgtgaagtatcagagtggcaaatagcaa |
909985 |
T |
|
| Q |
114 |
tagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctc |
213 |
Q |
| |
|
|| |||||| | |||||||| ||||||| || |||||||||||||||| ||||| ||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
909984 |
cagctttaactctacttccatcagcaccttccaaaggcacagagtaaactttagttgcatctgttttgtgacagtaaaaaactgcataagggtaattccg |
909885 |
T |
|
| Q |
214 |
tttgtgacacacaatagtattgttcttctcacccaatttattcactccttttgctataacatattgttgcaaacca |
289 |
Q |
| |
|
|||||| ||||||| |||| ||||| |||| ||| |||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
909884 |
tttgtggcacacaaccaaattg---ttctctcccattttcttcactccgtttgctattacatattgttgtaaacca |
909812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 29 - 170
Target Start/End: Complemental strand, 924602 - 924461
Alignment:
| Q |
29 |
ggaacagtccctggttgaattttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaacaacaatagttttaaccatgt |
128 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||||||||||||||||||| |||||| ||| ||||||| ||| |||| | ||| || |||||| || |
|
|
| T |
924602 |
ggaacagttccaggttgaattttgagtacttgaaaagccaaatgtttaggactccattgtgaagtatcagagtggcaaatagcaacagctttaactttgg |
924503 |
T |
|
| Q |
129 |
ttccatcaacaccttctaagggcacagagtaaacttcagttg |
170 |
Q |
| |
|
|||||||||||||||| | |||| | ||||||||| ||||| |
|
|
| T |
924502 |
ttccatcaacaccttccataggcaaatagtaaactttagttg |
924461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 11066 - 10806
Alignment:
| Q |
1 |
atgatcctgtgggaggatgtgacaaataggaacagtccctggttgaattttgagcacttgaaaagccaaatgtttagggttccattctgatgtatcagtg |
100 |
Q |
| |
|
|||||||| || |||| |||||||| ||||||||||| ||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11066 |
atgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgatgtatcagtg |
10967 |
T |
|
| Q |
101 |
tgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaaacttcagttgaatcagttttatgacagtaaaaaactgcat |
200 |
Q |
| |
|
||||| ||| |||||| |||||| || |||||||| |||| || || |||||||||||| ||| ||||| ||| ||||| ||||||||||| ||||||| |
|
|
| T |
10966 |
tgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaaacactgcat |
10867 |
T |
|
| Q |
201 |
aagggtaattctctttgtgacacacaatagtattgttcttctcacccaatttattcactcc |
261 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||| |
|
|
| T |
10866 |
aagggtaattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactcc |
10806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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