View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6552_high_1 (Length: 938)

Name: NF6552_high_1
Description: NF6552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6552_high_1
NF6552_high_1
[»] chr1 (9 HSPs)
chr1 (19-720)||(47700010-47700717)
chr1 (27-276)||(47710752-47710995)
chr1 (19-240)||(47757661-47757882)
chr1 (19-240)||(47743260-47743481)
chr1 (19-237)||(47715496-47715714)
chr1 (47-188)||(47771507-47771648)
chr1 (48-188)||(47775660-47775800)
chr1 (45-134)||(6525859-6525948)
chr1 (46-130)||(6514564-6514648)
[»] chr8 (1 HSPs)
chr8 (19-240)||(11225547-11225768)
[»] chr5 (2 HSPs)
chr5 (49-188)||(27367934-27368073)
chr5 (46-181)||(28826813-28826948)


Alignment Details
Target: chr1 (Bit Score: 552; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 19 - 720
Target Start/End: Complemental strand, 47700717 - 47700010
Alignment:
Q  19 ggagaaactggagggagggtacaatcacaaatataatagatccatcattaagcaatggttcacaaaatgaaataatgagatgcattcacattgctttact 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  47700717 ggagaaactggagggagggtacaatcacaaatataatagatccatcattaaacaacggttcacaaaatgaaataatgagatgcattcacattgctttact 47700618  T
Q  119 atgtgttcaagaaaatttggttgacaggccaactatggcaaccattgcattcatgcttagtagttattctatctctgccccggtaccgttggagcctgct 218  Q
    |||||||||||||||||||||||| || ||||  ||||||||||||| | |||||||||||||||||||||| |||  | ||||||| ||||||||||||    
T  47700617 atgtgttcaagaaaatttggttgaaagaccaaacatggcaaccattgtactcatgcttagtagttattctatgtctctctcggtacctttggagcctgct 47700518  T
Q  219 tcttttatgggaggcagaactaaaactagaagcctttcagttccagatatgcaatttggagaagaaaattcagaggcaataggttcaaatgagtccaaga 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47700517 tcttttatgggaggcagaactaaaactagaagcctttcagttccagatatgcaatttggagaagaaaattcagaggcaataggttcaaatgagtccaaga 47700418  T
Q  319 gacaagagtaaatcaacaatacaatctgtaaacaagaatttgattgctgaagtattgtgatttagcaactttggtcccccactttttacacgagcaattt 418  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47700417 gacaagagtaaatcaacaatacaatctctgaacaagaattcgattgctgaagtattgtgatttagcaactttggtcccccactttttacacgcgcaattt 47700318  T
Q  419 tggtctcaatattaagtccctaattgtatttttgtgactccatttcactttgtgtaagtcaattgggacat----atatgagatatactcaattgaagcg 514  Q
    ||||| | ||||||| |||||||||||||||||||||||||| |||| |||||||||||||| ||||||||    |||||||||||||||||||||||||    
T  47700317 tggtccccatattaaatccctaattgtatttttgtgactccacttcattttgtgtaagtcaactgggacatatatatatgagatatactcaattgaagcg 47700218  T
Q  515 agcaaatgtgttacagaaataggatacacatcacataaattct--tatggtattgacatgtaacaaatgattggtctactagtcttagagggctgaacac 612  Q
    |||||||||||||||||| ||||||||||||||||||||||||  |||||||||||| || ||||||||||| |||||| ||||||| ||||||||||||    
T  47700217 agcaaatgtgttacagaattaggatacacatcacataaattcttatatggtattgacttgcaacaaatgatttgtctaccagtcttaaagggctgaacac 47700118  T
Q  613 tcaccaagaaatatttctacaaaattgcaccttgttgagaaattacataaaagactaaagttatatcaagagaaaccctccttaactatgagtgaggtca 712  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47700117 tcgccaagaaatatttctacaaaattgcaccttgttgagaaattacatagaagagtaaagttatatcaagagaaaccctccttaactatgagtgaggtca 47700018  T
Q  713 aaataaac 720  Q
    ||||||||    
T  47700017 aaataaac 47700010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 27 - 276
Target Start/End: Complemental strand, 47710995 - 47710752
Alignment:
Q  27 tggagggagggtacaatcacaaatataatagatccatcattaagcaatggttcacaaaatgaaataatgagatgcattcacattgctttactatgtgttc 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47710995 tggagggagggtacaatcacaaatataatagatccatcattaagcaatggttcacaaaatgaaataatgagatgcattcacattgctttactatgtgttc 47710896  T
Q  127 aagaaaatttggttgacaggccaactatggcaaccattgcattcatgcttagtagttattctatctctgccccggtaccgttggagcctgcttcttttat 226  Q
    |||||||||||||||| || ||||||||||||||| ||||| |||||||||||||||||||| | |||  | | ||||| ||||||||||| |||||| |    
T  47710895 aagaaaatttggttgaaagaccaactatggcaaccgttgcactcatgcttagtagttattctttatctctctctgtacctttggagcctgcatcttttgt 47710796  T
Q  227 gggaggcagaactaaaactagaagcctttcagttccagatatgcaatttg 276  Q
    |   |||||      ||||||||||||| |||||| ||| ||||||||||    
T  47710795 gcttggcag------aactagaagccttccagttcgagacatgcaatttg 47710752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 47757882 - 47757661
Alignment:
Q  19 ggagaaactggagggagggtacaatcacaaatataatagatccatcattaagcaatggttcacaaaatgaaataatgagatgcattcacattgctttact 118  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47757882 ggagaaactggagggcgggtacaatcacaaatataattgatccatcattaagcaatggttcactaaatgaaataatgagatgcattcacattgctttact 47757783  T
Q  119 atgtgttcaagaaaatttggttgacaggccaactatggcaaccattgcattcatgcttagtagttattctatctctgccccggtaccgttggagcctgct 218  Q
    |||||||||||||||||||||||| || ||||| ||||||||||||| | |||||||||||||||||||||| |||  | | ||||| |||||||||||     
T  47757782 atgtgttcaagaaaatttggttgaaagaccaaccatggcaaccattgtactcatgcttagtagttattctatgtctctctctgtacctttggagcctgca 47757683  T
Q  219 tcttttatgggaggcagaacta 240  Q
    ||| || |||| ||||||||||    
T  47757682 tctattgtgggcggcagaacta 47757661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 47743481 - 47743260
Alignment:
Q  19 ggagaaactggagggagggtacaatcacaaatataatagatccatcattaagcaatggttcacaaaatgaaataatgagatgcattcacattgctttact 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47743481 ggagaaactggagagagggtacaatcacaaatataatagatccatcattaagcaatggttcacgaaatgaaataatgagatgcattcacattgctttact 47743382  T
Q  119 atgtgttcaagaaaatttggttgacaggccaactatggcaaccattgcattcatgcttagtagttattctatctctgccccggtaccgttggagcctgct 218  Q
    |||||||||||||||||||||||| || ||||  ||||||||| ||| | |||||||||||||||||||||||| |  | | ||||| |||||||||||     
T  47743381 atgtgttcaagaaaatttggttgaaagaccaatcatggcaaccgttgtagtcatgcttagtagttattctatctttctctccgtacctttggagcctgca 47743282  T
Q  219 tcttttatgggaggcagaacta 240  Q
    ||| || ||||||| |||||||    
T  47743281 tctattgtgggaggtagaacta 47743260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 47715714 - 47715496
Alignment:
Q  19 ggagaaactggagggagggtacaatcacaaatataatagatccatcattaagcaatggttcacaaaatgaaataatgagatgcattcacattgctttact 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47715714 ggagaaactggagagagggtacaatcacaaatataatagatccatcattaagcaatggttcacgaaatgaaataatgagatgcattcacattgctttact 47715615  T
Q  119 atgtgttcaagaaaatttggttgacaggccaactatggcaaccattgcattcatgcttagtagttattctatctctgccccggtaccgttggagcctgct 218  Q
    |||||||||||||||||||||||| || ||||  ||||||||| ||| | |||||||||||||||||| |||| ||  | | ||||| |||||||||||     
T  47715614 atgtgttcaagaaaatttggttgaaagaccaatcatggcaaccgttgtactcatgcttagtagttattatatcactctcgctgtacctttggagcctgca 47715515  T
Q  219 tcttttatgggaggcagaa 237  Q
    ||| || ||||||||||||    
T  47715514 tctattgtgggaggcagaa 47715496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 47 - 188
Target Start/End: Original strand, 47771507 - 47771648
Alignment:
Q  47 aaatataatagatccatcattaagcaatggttcacaaaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgacagg 146  Q
    |||||| |||||| || |||||| ||||  ||||  ||||||||||||||||||||| || ||||  ||||| ||||||||||||||| | ||||||||     
T  47771507 aaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattggcttactttgtgttcaagaaaatgtagttgacaga 47771606  T
Q  147 ccaactatggcaaccattgcattcatgcttagtagttattct 188  Q
    ||||| ||||| ||  ||||| ||||||||| ||||||||||    
T  47771607 ccaaccatggctactgttgcactcatgcttaatagttattct 47771648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 48 - 188
Target Start/End: Original strand, 47775660 - 47775800
Alignment:
Q  48 aatataatagatccatcattaagcaatggttcacaaaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgacaggc 147  Q
    ||||| ||||||||| |||||| ||||  ||||  |||||||||||||||||| || || ||||| ||||| ||||||||||||||| | |||||||| |    
T  47775660 aatattatagatccagcattaaacaatatttcagcaaatgaaataatgagatgtatccatattgccttactttgtgttcaagaaaatgtagttgacagac 47775759  T
Q  148 caactatggcaaccattgcattcatgcttagtagttattct 188  Q
    |||| |||||  |  ||||| ||||||||| ||||||||||    
T  47775760 caaccatggctgctgttgcactcatgcttaatagttattct 47775800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 6525859 - 6525948
Alignment:
Q  45 acaaatataatagatccatcattaagcaatggttcacaaaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaat 134  Q
    |||||| | ||||||||  |||||| ||||| ||||   || ||||||||||||||||| |||||||  ||||| |||||||||||||||    
T  6525859 acaaatgttatagatcccacattaaacaatgattcagtgaacgaaataatgagatgcatccacattgggttactttgtgttcaagaaaat 6525948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 6514648 - 6514564
Alignment:
Q  46 caaatataatagatccatcattaagcaatggttcacaaaatgaaataatgagatgcattcacattgctttactatgtgttcaaga 130  Q
    ||||||| ||||||||| |||||| |||||  |||| |||||| ||||||||||| || || ||||  ||||| |||||||||||    
T  6514648 caaatatcatagatccaacattaaacaatgactcactaaatgagataatgagatgtatccatattggattactttgtgttcaaga 6514564  T

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Target: chr8 (Bit Score: 146; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 11225547 - 11225768
Alignment:
Q  19 ggagaaactggagggagggtacaatcacaaatataatagatccatcattaagcaatggttcacaaaatgaaataatgagatgcattcacattgctttact 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11225547 ggagaaactggagagagggtacaatcacaaatataatagatccatcattaagcaatggttcacgaaatgaaataatgagatgcattcacattgctttact 11225646  T
Q  119 atgtgttcaagaaaatttggttgacaggccaactatggcaaccattgcattcatgcttagtagttattctatctctgccccggtaccgttggagcctgct 218  Q
    |||||||||||||||||||||||| || ||||  ||||||||| ||| | |||||||||||||||||||||||| |  | | ||||| |||||||||||     
T  11225647 atgtgttcaagaaaatttggttgaaagaccaatcatggcaaccgttgtagtcatgcttagtagttattctatctttctctccgtacctttggagcctgca 11225746  T
Q  219 tcttttatgggaggcagaacta 240  Q
    ||| || ||||||| |||||||    
T  11225747 tctattgtgggaggtagaacta 11225768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 188
Target Start/End: Complemental strand, 27368073 - 27367934
Alignment:
Q  49 atataatagatccatcattaagcaatggttcacaaaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgacaggcc 148  Q
    |||| ||||||||||||||||  ||   |||||||||||||||  |||||||||| ||||||| |||||| ||  |||||||||| ||| |||| || ||    
T  27368073 atattatagatccatcattaaaaaacatttcacaaaatgaaatcttgagatgcatccacattggtttactctgcattcaagaaaacttgattgatagacc 27367974  T
Q  149 aactatggcaaccattgcattcatgcttagtagttattct 188  Q
    ||| |||||  |  ||||| ||||||||| ||||||||||    
T  27367973 aaccatggcttctgttgcagtcatgcttaatagttattct 27367934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 181
Target Start/End: Complemental strand, 28826948 - 28826813
Alignment:
Q  46 caaatataatagatccatcattaagcaatggttcacaaaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgacag 145  Q
    ||||||| |||||||||| ||||  |||  |||||  ||||||||| |||||||||||||| ||||  ||||||||||| ||||| ||| | | | |  |    
T  28826948 caaatattatagatccattattatacaacagttcaagaaatgaaatcatgagatgcattcatattggcttactatgtgtccaagacaatgtagctaaacg 28826849  T
Q  146 gccaactatggcaaccattgcattcatgcttagtag 181  Q
     ||||| ||||| ||||||||| ||||||| |||||    
T  28826848 accaaccatggctaccattgcactcatgctaagtag 28826813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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