View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6552_high_11 (Length: 412)
Name: NF6552_high_11
Description: NF6552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6552_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 272
Target Start/End: Complemental strand, 50806401 - 50806140
Alignment:
| Q |
11 |
acatcatcattgatcaaatgaatgaacatagcgagtccagtaatatatttgaagttttgaaatccctatatattacaagttttgacataccgtaggaatc |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50806401 |
acattatcattgatcaaatgaatgaacatagcgagtccagtaatatatttgaagttttgaaatccctatatattacaagttttgacataccgtaggaatc |
50806302 |
T |
|
| Q |
111 |
ggaactgatttcgaggattcagcaaatgtatcaaccttctcaaggttcagtgactgagttggagcatcgaagacaatattctataacaacacaatggaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50806301 |
ggaactgatttcgaggattcagcaaatgtatcaaccttctcaaggttcagtgactgagttggagcatcgaagacaatattctataacaacacaatggaaa |
50806202 |
T |
|
| Q |
211 |
atgaaacataagccgtaaaaaatcaaatagccatatctgttataaataaaatagcttcatag |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50806201 |
atgaaacataagccgtaaaaaatcaaatagccatatctgttataaataaaatagcttcatag |
50806140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 50869476 - 50869737
Alignment:
| Q |
11 |
acatcatcattgatcaaatgaatgaacatagcgagtccagtaatatatttgaagttttgaaatccctatatattacaagttttgacataccgtaggaatc |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50869476 |
acattatcattgatcaaatgaatgaacatagcgagtccagtaatatatttgaagttttgaaatccctatatattacaagttttgacataccgtaggaatc |
50869575 |
T |
|
| Q |
111 |
ggaactgatttcgaggattcagcaaatgtatcaaccttctcaaggttcagtgactgagttggagcatcgaagacaatattctataacaacacaatggaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50869576 |
ggaactgatttcgaggattcagcaaatgtatcaaccttctcaaggttcagtgactgagttggagcatcgaagacaatattctataacaacacaatggaaa |
50869675 |
T |
|
| Q |
211 |
atgaaacataagccgtaaaaaatcaaatagccatatctgttataaataaaatagcttcatag |
272 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50869676 |
acaaaacataagccgtaaaaaatcaaatagccatatctgttataaataaaatagcttcatag |
50869737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 90 - 272
Target Start/End: Original strand, 44197037 - 44197216
Alignment:
| Q |
90 |
ttttgacataccgtaggaatcggaactgatttcgaggattcagcaaatgtatcaaccttctcaaggttcagtgactgagttggagcatcgaagacaatat |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44197037 |
ttttgacataccgtaggaatcggaactgatttcgaggattcagcaaatgtatcaaccttctcaaggttcagtgactgagttggagcatcgaagacaatat |
44197136 |
T |
|
| Q |
190 |
tctataacaacacaatggaaaatgaaacataagccgtaaaaaatcaaatagccatatctgttataaataaaatagcttcatag |
272 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44197137 |
tctat---aacacaatggaaaacgaaacataagctgtaaaaaatcaaatagccatatctgttataaataaaatagcttcatag |
44197216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 44196460 - 44196541
Alignment:
| Q |
11 |
acatcatcattgatcaaatgaatgaacatagcgagtccagtaatatatttgaagttttgaaatccctatatattacaagttt |
92 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44196460 |
acattatcattgatcaaatgaatgaacataccgagtccagtaatatatttgaagttttgaaatccctatatattacaagttt |
44196541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 48553705 - 48553641
Alignment:
| Q |
28 |
atgaatgaacatagcgagtccagtaatatatttgaagttttgaaatccctatatattacaagttt |
92 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
48553705 |
atgaacgaacataccgagtccagtaatatatttgaagttttgaaatccctataaattacaggttt |
48553641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 90 - 272
Target Start/End: Original strand, 13675148 - 13675330
Alignment:
| Q |
90 |
ttttgacataccgtaggaatcggaactgatttcgaggattcagcaaatgtatcaaccttctcaaggttcagtgactgagttggagcatcgaagacaatat |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13675148 |
ttttgacataccgtaggaatcggaactgatttcgaggattcagcaaatgtatcaaccttctcaaggttcagtgactgagttggagcatcgaagacaatat |
13675247 |
T |
|
| Q |
190 |
tctataacaacacaatggaaaatgaaacataagccgtaaaaaatcaaatagccatatctgttataaataaaatagcttcatag |
272 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13675248 |
tctataacaacacaatggaaaacgaaacataagccgtaaaaaatcaaatagccatatctgttataaataaaatagcttcatag |
13675330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 133 - 272
Target Start/End: Complemental strand, 19965528 - 19965389
Alignment:
| Q |
133 |
caaatgtatcaaccttctcaaggttcagtgactgagttggagcatcgaagacaatattctataacaacacaatggaaaatgaaacataagccgtaaaaaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19965528 |
caaatgtatcaaccttctcaaggttcagtgactgggttggagcatcgaagacaatattctataacaacacaatggaaaacgaaacataagccgtaaaaaa |
19965429 |
T |
|
| Q |
233 |
tcaaatagccatatctgttataaataaaatagcttcatag |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19965428 |
tcaaatagccatatctgttataaataaaatagcttcatag |
19965389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 19965913 - 19965832
Alignment:
| Q |
11 |
acatcatcattgatcaaatgaatgaacatagcgagtccagtaatatatttgaagttttgaaatccctatatattacaagttt |
92 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19965913 |
acattatcattgataaaaggaatgaacataccgagtccagtaatatatttgaatttttgaaatccctatatattacaagttt |
19965832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 25137366 - 25137402
Alignment:
| Q |
51 |
taatatatttgaagttttgaaatccctatatattaca |
87 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25137366 |
taatatattggaagttttgaaatccctatatattaca |
25137402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University