View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6552_high_16 (Length: 251)
Name: NF6552_high_16
Description: NF6552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6552_high_16 |
 | |
|
| [»] chr6 (30 HSPs) |
| |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 30)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 3172683 - 3172449
Alignment:
| Q |
17 |
attatgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaactttagattgaaggatcttcct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
3172683 |
attatgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaggtttgaaaaactttagattgaagcatcttcct |
3172584 |
T |
|
| Q |
117 |
actttaattaggataaaagatcctaatgatttgatgatagaatttatgactgaagtaggagataaatgtcacaaagcttctgctattgttttcaacactt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3172583 |
actttaattaggataaaagatcctaatgatttgatgatagaatttatgattgaagtaggagataaatgtcacaaagcttctgctattgttttcaacactt |
3172484 |
T |
|
| Q |
217 |
ctaatgaacttgagagtgatgttatgaatgctctt |
251 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3172483 |
ctaatgaacttgagagtgatgttatgaatactctt |
3172449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 4575250 - 4575019
Alignment:
| Q |
17 |
attatgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaactttagattgaaggatcttcct |
116 |
Q |
| |
|
||||||| |||||||||||||| || |||||||| |||||||||||| | | |||||||||| ||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
4575250 |
attatgacatgcagatgagagtgatctaacaaatgaatatttggacacaaaaattgactggatcccaggtttgaaaaacttcagattgaaggatcttcct |
4575151 |
T |
|
| Q |
117 |
actttaattaggataaaagatcctaatgatttgatgatagaatttatgactgaagtaggagataaatgtcacaaagcttctgctattgttttcaacactt |
216 |
Q |
| |
|
| ||||| | || |||| |||||||||| |||| |||| ||||| |||||||| | |||||||||||| | |||||||| ||| || ||||| |||| |
|
|
| T |
4575150 |
aggttaataaagacaaaaaatcctaatgacttgacgataagatttaatactgaagtggcagataaatgtcatagagcttctggtatggtattcaatactt |
4575051 |
T |
|
| Q |
217 |
ctaatgaacttgagagtgatgttatgaatgct |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
4575050 |
ctaatgaacttgagagtgatgttatgaatgct |
4575019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 4506799 - 4506565
Alignment:
| Q |
17 |
attatgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaactttagattgaaggatcttcct |
116 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| |||||| |||||||||| |||| ||||||||| |
|
|
| T |
4506799 |
attatgatatgcagatgagagttatctaacaaatggatatttggacactaaggtagactggattccaggtttgagaaactttagactgaaagatcttcct |
4506700 |
T |
|
| Q |
117 |
actttaattaggataaaagatcctaatgatttgatgatagaatttatgactgaagtaggagataaatgtcacaaagcttctgctattgttttcaacactt |
216 |
Q |
| |
|
||| || |||| || ||||||||| ||||||| |||||||||||| | ||||| || ||| | || ||| | ||| ||| |||||||| |||| |||| |
|
|
| T |
4506699 |
gattttataaggacaacagatcctaacgatttgaggatagaatttattattgaagcagcagaaacatttcatagagcctcttctattgttctcaatactt |
4506600 |
T |
|
| Q |
217 |
ctaatgaacttgagagtgatgttatgaatgctctt |
251 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
4506599 |
ctaatgaacttgagagtaatgttctgaatgctctt |
4506565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 4561446 - 4561215
Alignment:
| Q |
17 |
attatgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaactttagattgaaggatcttcct |
116 |
Q |
| |
|
||||||| |||||||||||||| || |||||||| |||| ||||||| | |||||||||||| ||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
4561446 |
attatgacatgcagatgagagtgatctaacaaatgaatatctggacacgaaagttgactggatcccaggtttgaaaaacttcagattgaaggatcttcct |
4561347 |
T |
|
| Q |
117 |
actttaattaggataaaagatcctaatgatttgatgatagaatttatgactgaagtaggagataaatgtcacaaagcttctgctattgttttcaacactt |
216 |
Q |
| |
|
| ||||| | || |||| |||||||||| |||| |||| ||||| |||||||| | ||||||||||| | |||||||| ||| || ||||| |||| |
|
|
| T |
4561346 |
aggttaataaagacaaaaaatcctaatgacttgacgataagatttaacactgaagtggcagataaatgtcttagagcttctggtatggtattcaatactt |
4561247 |
T |
|
| Q |
217 |
ctaatgaacttgagagtgatgttatgaatgct |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
4561246 |
ctaatgaacttgagagtgatgttatgaatgct |
4561215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 4514311 - 4514545
Alignment:
| Q |
17 |
attatgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaactttagattgaaggatcttcct |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||| |||||||||| ||||||| |||||| |
|
|
| T |
4514311 |
attatgatatgcagatgagagttatttgacaaatggatatttggacactaaagttgactggattccaggtttgcgaaactttagactgaaggaccttcct |
4514410 |
T |
|
| Q |
117 |
actttaattaggataaaagatcctaatgatttgatgatagaatttatgactgaagtaggagataaatgtcacaaagcttctgctattgttttcaacactt |
216 |
Q |
| |
|
||| || ||| || |||| |||||||||||||| |||||||||| |||| | | ||||| | ||| | ||||||||||||| |||| || |||| |
|
|
| T |
4514411 |
gattttatacggacaacagatgctaatgatttgatgttagaatttatctttgaaatggtagatagacttcatagagcttctgctatttttttaaatactt |
4514510 |
T |
|
| Q |
217 |
ctaatgaacttgagagtgatgttatgaatgctctt |
251 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4514511 |
ctaatgatcttgagagtgatgttatgaatgctctt |
4514545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 4481631 - 4481402
Alignment:
| Q |
21 |
tgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaactttagattgaaggatcttcctactt |
120 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||| | | ||| |||||||||||| ||||||||||||||||||||||||| |||||| || |
|
|
| T |
4481631 |
tgatatgcagatgagagttatttaacagatggatatttggacgcaacagtagactggattccaggtttgaaaaactttagattgaaggaccttcctgatt |
4481532 |
T |
|
| Q |
121 |
taattaggataaaagatcctaatgatttgatgatagaatttatgactgaagtaggagataaatgtcacaaagcttctgctattgttttcaacacttctaa |
220 |
Q |
| |
|
|||||| | ||| |||||||||| | ||||| ||| ||| || | |||||| |||||||||||| | ||| |||||| ||||| |||| |||||| | |
|
|
| T |
4481531 |
taattaaggtaacagatcctaatcacttgatcataaaatataaaaatgaagtgacagataaatgtcaaagagcatctgcttttgttatcaatacttctta |
4481432 |
T |
|
| Q |
221 |
tgaacttgagagtgatgttatgaatgctct |
250 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
4481431 |
tgaacttgagagtgatgttatgaattctct |
4481402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 4470745 - 4470516
Alignment:
| Q |
17 |
attatgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaactttagattgaaggatcttcct |
116 |
Q |
| |
|
||||||||||||||||||||||||| || | |||||||||| |||| | |||||||||||||||| ||||||||||||| |||||||||||| ||||| |
|
|
| T |
4470745 |
attatgatatgcagatgagagttatctaatagatggatatttcgacattgaagttgactggattccaggtttgaaaaacttcagattgaaggattttcct |
4470646 |
T |
|
| Q |
117 |
actttaattaggataaaagatcctaatgatttgatgatagaatttatgactgaagtaggagataaatgtcacaaagcttctgctattgttttcaacactt |
216 |
Q |
| |
|
||| | |||||||||||||||||| || ||| || ||| || | |||||| | |||||||||| | |||||||||||||||||| || |||| |
|
|
| T |
4470645 |
gaaacaataaagataaaagatcctaatgactttatgttaaaatatacaaatgaagtgacaaataaatgtcaaagagcttctgctattgttttgaatactt |
4470546 |
T |
|
| Q |
217 |
ctaatgaacttgagagtgatgttatgaatg |
246 |
Q |
| |
|
||||||||||||| |||||||||||||||| |
|
|
| T |
4470545 |
ctaatgaacttgaaagtgatgttatgaatg |
4470516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 4266358 - 4266589
Alignment:
| Q |
22 |
gatatgcagatgagagttatgaaacaaatggatatttggacactatagttg---actggattccaagtttgaaaaactttagattgaaggatcttcctac |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| || | || ||||| ||||||||| | ||||| |||||||||| |||||||| |||||| |
|
|
| T |
4266358 |
gatatgcagatgagagttatctaacaaatggatatttagataataaagttggtgactggattcaaggtttgcaaaactttaggttgaaggaccttcctga |
4266457 |
T |
|
| Q |
119 |
tttaattaggataaaagatcctaatgatttgatgatagaatttatgactgaagtaggagataaatgtcacaaagcttctgctattgttttcaacacttct |
218 |
Q |
| |
|
||| | ||||| | |||||||||||||||||||||| ||||||| || ||||| | |||| ||||||| ||| ||| |||||||| |||| ||||| |
|
|
| T |
4266458 |
ttttacaaggattacagatcctaatgatttgatgataaaatttattaccgaagtggcggatagatgtcaccgagcctcttctattgttatcaatacttca |
4266557 |
T |
|
| Q |
219 |
aatgaacttgagagtgatgttatgaatgctct |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4266558 |
tatgaacttgagagtgatgttatgaatgctct |
4266589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 4458534 - 4458304
Alignment:
| Q |
23 |
atatgcagatgagagttatgaaacaaatggatatttggacactatagt---tgactggattccaagtttgaaaaactttagattgaaggatcttcctact |
119 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||| | ||| |||||||||| || ||||| |||||||||| |||||||| |||||| | |
|
|
| T |
4458534 |
atatgcagaagagagttatttaacaaatggatatttggacaaaaaagtcggtgactggatttcaggtttgcaaaactttaggttgaaggaccttcctgat |
4458435 |
T |
|
| Q |
120 |
ttaattaggataaaagatcctaatgatttgatgatagaatttatgactgaagtaggagataaatgtcacaaagcttctgctattgttttcaacacttcta |
219 |
Q |
| |
|
|| || | ||| | |||||||||| ||||||||||| ||||||| || ||||| | ||||| |||||| | ||| ||| |||||||| |||| |||||| |
|
|
| T |
4458434 |
tttataaagattacagatcctaataatttgatgataaaatttataaccgaagtggcagatagatgtcatagagcctcttctattgttatcaatacttctt |
4458335 |
T |
|
| Q |
220 |
atgaacttgagagtgatgttatgaatgctct |
250 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
4458334 |
atgaacttgagagtgatgttatgaatactct |
4458304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 4462065 - 4461836
Alignment:
| Q |
17 |
attatgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaactttagattgaaggatcttcct |
116 |
Q |
| |
|
|||||||||||||||||||| |||| |||| |||||||||| |||||| |||||||||||||||| |||||||||| || |||||||||||| ||||| |
|
|
| T |
4462065 |
attatgatatgcagatgagatttatctaacagatggatatttagacactgaagttgactggattccaggtttgaaaaatttcagattgaaggattttcct |
4461966 |
T |
|
| Q |
117 |
actttaattaggataaaagatcctaatgatttgatgatagaatttatgactgaagtaggagataaatgtcacaaagcttctgctattgttttcaacactt |
216 |
Q |
| |
|
||| | |||||||||||||||| | ||| ||||| ||||| | | |||| | |||||||||||||| |||||||||| || |||| || |||| |
|
|
| T |
4461965 |
gaaacaataaagataaaagatcctaataacttgctgataaaatttgtcagtgaaatgacagataaatgtcacagagcttctgctgttattttgaatactt |
4461866 |
T |
|
| Q |
217 |
ctaatgaacttgagagtgatgttatgaatg |
246 |
Q |
| |
|
|||||||||| || |||||| ||||||||| |
|
|
| T |
4461865 |
ctaatgaactcgaaagtgatattatgaatg |
4461836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 251
Target Start/End: Original strand, 4489555 - 4489779
Alignment:
| Q |
21 |
tgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaactttagattgaaggatcttcctactt |
120 |
Q |
| |
|
|||||||||||||||||| || |||| ||||| |||||||||||| |||||| ||||||||| ||||||||| | |||| ||||||||| ||||| | |
|
|
| T |
4489555 |
tgatatgcagatgagagtaatctaacagatggaaatttggacactaaagttgaatggattccaggtttgaaaagcattagtttgaaggattttcctgata |
4489654 |
T |
|
| Q |
121 |
taattaggataaaagatcctaatgatttgatgatagaatttatgactgaagtaggagataaatgtcacaaagcttctgctattgttttcaacacttctaa |
220 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||| ||| || | ||||| |||||||||||| | || || | ||| ||||||| |||||||| |
|
|
| T |
4489655 |
taataaggataaaagatcctgatg------tgataaaatataaaattgaagagacagataaatgtcaaagaggctcaaccattattttcaatacttctaa |
4489748 |
T |
|
| Q |
221 |
tgaacttgagagtgatgttatgaatgctctt |
251 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| |
|
|
| T |
4489749 |
tgaacttgagagtgatgctatcaatgctctt |
4489779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 4517263 - 4517030
Alignment:
| Q |
17 |
attatgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaactttagattgaaggatcttcct |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||| |||||||||| | ||||| || ||| |
|
|
| T |
4517263 |
attatgatatgcagatgagagttatttgacaaatggatatttggacactaaagttgactggattccaggtttgggaaactttagactaaaggacctgcct |
4517164 |
T |
|
| Q |
117 |
-actttaattaggataaaagatcctaatgatttgatgatagaatttatgactgaagtaggagataaatgtcacaaagcttctgctattgttttcaacact |
215 |
Q |
| |
|
||||| || || | | |||||||||||| | |||||| ||||||| | ||||| | |||| ||| ||||| | ||||||||||||| ||| |
|
|
| T |
4517163 |
gacttt-ataagaactactgatcctaatgatataatgataaaatttatcattgaagcggccgatagggttcatgaagctaattctattgttttcaatact |
4517065 |
T |
|
| Q |
216 |
tctaatgaacttgagagtgatgttatgaatgctct |
250 |
Q |
| |
|
||| |||||||||||| |||||| || |||||||| |
|
|
| T |
4517064 |
tctgatgaacttgagaatgatgtaataaatgctct |
4517030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 4593172 - 4593084
Alignment:
| Q |
21 |
tgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaactttagattgaagga |
109 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||| ||| || ||||||||| |||||||||||||| | |||||||| |
|
|
| T |
4593172 |
tgatatgcagatgagagttatctaacaaatggatatttggaaactaaagtagattggattccaggtttgaaaaactttcggttgaagga |
4593084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 4503725 - 4503809
Alignment:
| Q |
167 |
tgaagtaggagataaatgtcacaaagcttctgctattgttttcaacacttctaatgaacttgagagtgatgttatgaatgctctt |
251 |
Q |
| |
|
|||||| | |||||||||||| | ||| || || ||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4503725 |
tgaagtggcagataaatgtcaaagagcctcagccattgttttcaatacttctaatgaacttgagagtgatgctatgaatgctctt |
4503809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 4617966 - 4617875
Alignment:
| Q |
18 |
ttatgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaactttagattgaagga |
109 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||| |||| ||| || |||||||| |||||||||||||| | |||||||| |
|
|
| T |
4617966 |
ttatgatatgcagatgagagttatctaacaaatggatgtttggaaactaaagtagattggattcccggtttgaaaaactttcggttgaagga |
4617875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 4602733 - 4602642
Alignment:
| Q |
18 |
ttatgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaactttagattgaagga |
109 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| |||||| || | ||| || ||||||||| |||||||||||||| | |||||||| |
|
|
| T |
4602733 |
ttatgatatgcagatgatagttatctaacaaatggatgtttggaaacaaaagtagattggattccaggtttgaaaaactttcggttgaagga |
4602642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 4299170 - 4299244
Alignment:
| Q |
176 |
agataaatgtcacaaagcttctgctattgttttcaacacttctaatgaacttgagagtgatgttatgaatgctct |
250 |
Q |
| |
|
||||| || ||||||||| |||||||||||||| || |||| | ||||||||||||||||||| ||||||||||| |
|
|
| T |
4299170 |
agatagatttcacaaagcatctgctattgtttttaatacttatgatgaacttgagagtgatgtaatgaatgctct |
4299244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 4564652 - 4564575
Alignment:
| Q |
21 |
tgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaacttt |
98 |
Q |
| |
|
|||||||||||| |||| ||| |||||||||||||||||| |||| || || ||||||||| |||||||||||||| |
|
|
| T |
4564652 |
tgatatgcagatcagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaacttt |
4564575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 4255989 - 4256044
Alignment:
| Q |
195 |
tctgctattgttttcaacacttctaatgaacttgagagtgatgttatgaatgctct |
250 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| ||||| |||||||||| |
|
|
| T |
4255989 |
tctgctattgtttttaacacttataatgaacttgagagcgatgtattgaatgctct |
4256044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 247
Target Start/End: Complemental strand, 4626774 - 4626663
Alignment:
| Q |
136 |
atcctaatgatttgatgatagaatttatgactgaagtaggagataaatgtcacaaagcttctgctattgttttcaacacttctaatgaacttgagagtga |
235 |
Q |
| |
|
||||||||||| | ||| |||||||| | | ||||| | ||||| || ||||| ||| || ||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
4626774 |
atcctaatgatgtcatggtagaatttctcattgaagcggcagatagatttcacagagcatcggctattgttttcaacacttacgatgaacttgagggtga |
4626675 |
T |
|
| Q |
236 |
tgttatgaatgc |
247 |
Q |
| |
|
||| |||||||| |
|
|
| T |
4626674 |
tgtaatgaatgc |
4626663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 246
Target Start/End: Complemental strand, 4558055 - 4557838
Alignment:
| Q |
29 |
agatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaactttagattgaaggatcttcct-actttaattag |
127 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||| ||| || || |||||| | ||| | |||||| || |||||||||| ||| ||||| || || |
|
|
| T |
4558055 |
agatgagagttatctgacaaacggatatttggacactaaagtggattgtattccaggattgcagaactttcgactgaaggatctgcctgacttt-ataag |
4557957 |
T |
|
| Q |
128 |
gataaaagatcctaatgatttgatgatagaatttatgactgaagtaggagataaatgtcacaaagcttctgctattgttttcaacacttctaatgaactt |
227 |
Q |
| |
|
||| | |||| | ||||||| |||| |||||||||| ||||| || || | ||||||||| |||||| || |||| || ||||||| ||||||| |
|
|
| T |
4557956 |
gattacagatacaaatgattcgatggtagaatttatcgttgaagcagcaggaagggctcacaaagcgtctgcttttatttttaatacttctagtgaactt |
4557857 |
T |
|
| Q |
228 |
gagagtgatgttatgaatg |
246 |
Q |
| |
|
|||| ||||| ||||||| |
|
|
| T |
4557856 |
gagaaggatgtaatgaatg |
4557838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 4484029 - 4484114
Alignment:
| Q |
17 |
attatgatatgcagatgagagttatgaaa-caaatggatatttggacactatagttgactggattccaagtttgaaaaactttaga |
101 |
Q |
| |
|
||||||||||||| || |||||||| || |||||| ||||||||||||| ||| |||||| ||||| |||||||||||||||| |
|
|
| T |
4484029 |
attatgatatgcaaataagagttatctaagcaaatgtatatttggacactgaagtagactgggttccagatttgaaaaactttaga |
4484114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 4568976 - 4568906
Alignment:
| Q |
17 |
attatgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttg |
89 |
Q |
| |
|
||||| ||||||||||||| |||| |||||||||||||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
4568976 |
attataatatgcagatgag--ttatctgacaaatggatatttggtcactaaagttgactggattccaggtttg |
4568906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 4568805 - 4568765
Alignment:
| Q |
198 |
gctattgttttcaacacttctaatgaacttgagagtgatgt |
238 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
4568805 |
gctattgttttcaatacttataatgaacttgagagtgatgt |
4568765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 4571910 - 4571855
Alignment:
| Q |
21 |
tgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactg |
76 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||| ||| ||||| |
|
|
| T |
4571910 |
tgatatgcagatgagagttatctgacaaacggatatttggacactaaagtggactg |
4571855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 4484159 - 4484201
Alignment:
| Q |
203 |
tgttttcaacacttctaatgaacttgagagtgatgttatgaat |
245 |
Q |
| |
|
||||||||| |||| ||||||||| |||||||||||||||||| |
|
|
| T |
4484159 |
tgttttcaatacttttaatgaactagagagtgatgttatgaat |
4484201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 4612916 - 4613006
Alignment:
| Q |
25 |
atgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaactttagattgaaggatcttcc |
115 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| |||| ||| ||||| |||| | | ||| | |||||| || ||||||||||||| |
|
|
| T |
4612916 |
atgcagatgagagttatctgacaaacggatatttggatactaaagtggactgtattcaaggattgcagaactttcgactgaaggatcttcc |
4613006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 4580186 - 4580141
Alignment:
| Q |
205 |
ttttcaacacttctaatgaacttgagagtgatgttatgaatgctct |
250 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
4580186 |
ttttaaacacttctaatgaacttgagaaggatgtaatgaatgctct |
4580141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 163
Target Start/End: Complemental strand, 4586572 - 4586432
Alignment:
| Q |
23 |
atatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaactttagattgaaggatcttcct-acttt |
121 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||||||||||||| ||| ||||| |||||| | ||| | |||||| || | |||||| | ||| ||||| |
|
|
| T |
4586572 |
atatgcagataagagttatctgacaaacggatatttggacactaaagtggactgtattccaggattggagaactttcgactaaaggatttgcctgacttt |
4586473 |
T |
|
| Q |
122 |
aattaggataaaagatcctaatgatttgatgatagaatttat |
163 |
Q |
| |
|
|| ||||| | ||||| ||||||| ||| ||||||||||| |
|
|
| T |
4586472 |
-ataaggattactgatccaaatgattcgatcatagaatttat |
4586432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 4259525 - 4259573
Alignment:
| Q |
198 |
gctattgttttcaacacttctaatgaacttgagagtgatgttatgaatg |
246 |
Q |
| |
|
||||| ||||| ||||||| | ||||||||||||||||||| ||||||| |
|
|
| T |
4259525 |
gctatcgtttttaacacttatgatgaacttgagagtgatgtaatgaatg |
4259573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 20863034 - 20863262
Alignment:
| Q |
18 |
ttatgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaactttagattgaaggatcttccta |
117 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||| |||| |||||| |||||||| ||||| ||| || ||| ||||||| ||| || |
|
|
| T |
20863034 |
ttatgatatacagatgagagttatctaacaaatggatatttggagactaaagttgatcggattccaggtttgcgaaatttcagactgaaggactttctta |
20863133 |
T |
|
| Q |
118 |
ctttaattaggataaaagatcctaatgatttgatgatagaatttatgactgaagtaggagataaatgtcacaaagcttctgctattgttttcaacacttc |
217 |
Q |
| |
|
||| || |||| || | |||||||||||| | ||||||||||| | | |||||||| ||||| || ||||| ||| ||||||||||||||||| |||| |
|
|
| T |
20863134 |
cttgcataaggacaacaaatcctaatgattcgttgatagaatttctcattgaagtagtagatagatttcacagagcctctgctattgttttcaatacttt |
20863233 |
T |
|
| Q |
218 |
taatgaacttgagagtgatgttatgaatg |
246 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
20863234 |
caatgagcttgagagtgatgttatgaatg |
20863262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 1675169 - 1675079
Alignment:
| Q |
20 |
atgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaactttagattgaaggat |
110 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||| || | ||| || ||||||||| |||||||||||||| | ||||||||| |
|
|
| T |
1675169 |
atgatatgcagatgagagacatctaacaaatggatatttggaaacaaaagtcgagtggattccaggtttgaaaaactttcggttgaaggat |
1675079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 16685482 - 16685542
Alignment:
| Q |
23 |
atatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattcca |
83 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||| ||| ||||| |||||| |
|
|
| T |
16685482 |
atatgcagatgagagttatctgacaaacggatatttggacactaaagtggactgtattcca |
16685542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 24103938 - 24103708
Alignment:
| Q |
23 |
atatgcagatgagagttatgaaacaaatggatatttggacactatagttga---ctggattccaagtttgaaaaactttagattgaaggatcttcctact |
119 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||| || ||||| | |||||||| ||||| | |||||||| |||||||| |||||| | |
|
|
| T |
24103938 |
atatgcagatgagagttatctaacaaatggatatttagacaataaagttggtggcaggattccaggtttgcataactttaggttgaaggaccttcctgat |
24103839 |
T |
|
| Q |
120 |
ttaattaggataaaagatcctaatgatttgatgatagaatttatgactgaagtaggagataa-atgtcacaaagcttctgctattgttttcaacacttct |
218 |
Q |
| |
|
|| | ||||| | |||||||||||||||||||||| ||||||| || ||||| || | ||| |||||||| ||| ||| |||||||| |||| ||||| |
|
|
| T |
24103838 |
tttacaaggattacagatcctaatgatttgatgataaaatttattaccgaagt-ggcggtaagatgtcacagagcctcttctattgttatcaatacttca |
24103740 |
T |
|
| Q |
219 |
aatgaacttgagagtgatgttatgaatgctct |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
24103739 |
tatgaacttgagagtgatgttatgaatgctct |
24103708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 2908 - 3138
Alignment:
| Q |
17 |
attatgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaactttagattgaaggatcttcct |
116 |
Q |
| |
|
||||||| | |||||||| |||||| |||| |||||||||||||| | ||| || || ||||| || ||||||||||| || | ||||| |||||| |
|
|
| T |
2908 |
attatgacaagcagatgatagttatttgacaagtggatatttggacaacaaagtagattgtattccgggtatgaaaaactttcgactaaaggaccttcct |
3007 |
T |
|
| Q |
117 |
-actttaattaggataaaagatcctaatgatttgatgatagaatttatgactgaagtaggagataaatgtcacaaagcttctgctattgttttcaacact |
215 |
Q |
| |
|
|||||| | || | |||||||| |||||||| ||| |||||||| | | ||||| || |||| ||| ||||| ||||||||| |||||||| |||||| |
|
|
| T |
3008 |
gacttta-taagaacaaaagatctgaatgattttatggtagaatttttcattgaagcagcagatcaatttcacagagcttctgcaattgtttttaacact |
3106 |
T |
|
| Q |
216 |
tctaatgaacttgagagtgatgttatgaatgc |
247 |
Q |
| |
|
| ||||||||||||||||||||| ||||||| |
|
|
| T |
3107 |
tataatgaacttgagagtgatgtactgaatgc |
3138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 406 - 316
Alignment:
| Q |
20 |
atgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaactttagattgaaggat |
110 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||| || | ||| || ||||||||| |||||||||||||| | ||||||||| |
|
|
| T |
406 |
atgatatgcagatgagagacatctaacaaatggatatttggaaacaaaagtcgagtggattccaggtttgaaaaactttcggttgaaggat |
316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 1282050 - 1281982
Alignment:
| Q |
26 |
tgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaagtttgaaaaa |
94 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| || | ||| || ||||||||| |||||||||| |
|
|
| T |
1282050 |
tgcagatgagagttatctaacaaatggatatttggaaacaaaagtagattggattccaggtttgaaaaa |
1281982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 3087193 - 3087132
Alignment:
| Q |
186 |
cacaaagcttctgctattgttttcaacacttctaatgaacttgagagtgatgttatgaatgc |
247 |
Q |
| |
|
|||||||| ||||||||| | || ||||||| | ||||||||||||||||||| |||||||| |
|
|
| T |
3087193 |
cacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgc |
3087132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University