View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6552_high_2 (Length: 539)
Name: NF6552_high_2
Description: NF6552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6552_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 527
Target Start/End: Original strand, 40683888 - 40684387
Alignment:
| Q |
19 |
aaacacggtgtttctattt-atagtgtcctatttagttagtcaatgttgtttcaaatcccattctggtatgttattgacgatgtattttttgaaattact |
117 |
Q |
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| T |
40683888 |
aaacacggtgtttatattttatagtgtcctatttatttagtcaatgttgttttaaatcccattctgctatgctattgacgatgtattttttgaaattact |
40683987 |
T |
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| Q |
118 |
atttaacaagtggattagattcaacacatgtagtacttattcttg--atagaagagtgtccgaccctacacatgtgattataaatttcattatgtcannn |
215 |
Q |
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| T |
40683988 |
att---------gattacattcaacacatgtagtacttatacttctaatagaaaggtgtccgaccctacacatgtgattttatattttattatgtcattt |
40684078 |
T |
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| Q |
216 |
nnnnaaaattattattggcatcgacgtgtcaatgtcttatctgatgtttgtgtttaggtttcatcgatttttactaacttgcactgaaagcgcatgcgtt |
315 |
Q |
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| T |
40684079 |
ttt--aaattattatcggtatcgacgtgtcaatgtcttatccgatgtttgtctttatgtttcatagattttt-ctaacttgcactgagagcgcatgcgtt |
40684175 |
T |
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| Q |
316 |
cagactaattaacaatcaaattctgctcaaatcgttaagccaaagaattatagtcaggtatataattctttgggtgacatctaggatgagggtccaacta |
415 |
Q |
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| T |
40684176 |
cagactaattaacaatcaaattctgctcaaatcgtcaagccaaagaattatagtcaagtatataattatttgggtgacatctaggatgagggtccaacta |
40684275 |
T |
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| Q |
416 |
aacccctcacacatgtattagcaaaattgaccatacgattttaagcaaaatcattgccaacggcttagatgttagattgttactactatttagtctcctt |
515 |
Q |
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| T |
40684276 |
aacccctcacacatgtactagcaaaattgaccatacgattttaagcaaaatcattgccaacggctgagatgttagattgttactactatttagtctcctt |
40684375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 40677449 - 40677498
Alignment:
| Q |
103 |
ttttttgaaattactatttaacaagtggattagattcaacacatgtagtac |
153 |
Q |
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| T |
40677449 |
tttttttaaattactaattaacaagtg-attacattcaacacatgtagtac |
40677498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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