View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6552_high_21 (Length: 225)
Name: NF6552_high_21
Description: NF6552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6552_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 98 - 218
Target Start/End: Complemental strand, 32650986 - 32650866
Alignment:
| Q |
98 |
tactgccattcattcttctccaatttctatcaccttcttccactttgatttcctctccacaactccaaccccatatccacataatcgaagaaggagacag |
197 |
Q |
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| T |
32650986 |
tactgccattcattcttctccaatttctatcaccttcttccactttgatttcctctccacaactccaaccccatatccacacaattgaagaaggagacag |
32650887 |
T |
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| Q |
198 |
aagatatttatagtggttagc |
218 |
Q |
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| T |
32650886 |
aagatatttacagtggttagc |
32650866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 32651118 - 32651072
Alignment:
| Q |
1 |
tgttcaccaaaccgctaaaaatcagtgtgatatttttgcttcccgtt |
47 |
Q |
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| T |
32651118 |
tgttcaccgaaccgctaaaaatcagtgtgatatttttgcttcccgtt |
32651072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 33854099 - 33854148
Alignment:
| Q |
98 |
tactgccattcattcttctccaatttctatcaccttcttccactttgatt |
147 |
Q |
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| T |
33854099 |
tactgccattcattcttctccaatttctatcaccttcgtccactttgatt |
33854148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 33854179 - 33854239
Alignment:
| Q |
147 |
ttcctctccacaactccaaccccatatccacataatcgaagaaggagacagaagatattta |
207 |
Q |
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|||||||||| |||||||| |||||||||||| ||||||||||||||||| |||||||||| |
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| T |
33854179 |
ttcctctccataactccaaacccatatccacacaatcgaagaaggagacaaaagatattta |
33854239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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