View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6552_low_11 (Length: 423)

Name: NF6552_low_11
Description: NF6552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6552_low_11
NF6552_low_11
[»] chr3 (6 HSPs)
chr3 (48-344)||(36324260-36324552)
chr3 (12-49)||(36324591-36324628)
chr3 (369-407)||(31687908-31687946)
chr3 (339-377)||(46233983-46234021)
chr3 (366-407)||(19766049-19766090)
chr3 (140-221)||(36306737-36306817)
[»] scaffold0003 (1 HSPs)
scaffold0003 (343-407)||(43170-43234)
[»] chr6 (2 HSPs)
chr6 (343-407)||(27444127-27444191)
chr6 (343-377)||(31444771-31444805)
[»] chr4 (4 HSPs)
chr4 (343-407)||(26720237-26720301)
chr4 (343-377)||(32651290-32651324)
chr4 (343-377)||(38467731-38467765)
chr4 (345-377)||(3649873-3649905)
[»] scaffold0014 (1 HSPs)
scaffold0014 (343-407)||(32615-32679)
[»] scaffold0152 (1 HSPs)
scaffold0152 (366-407)||(10230-10271)
[»] chr8 (3 HSPs)
chr8 (341-377)||(44663703-44663739)
chr8 (366-405)||(19962065-19962104)
chr8 (341-377)||(35348989-35349025)
[»] chr1 (3 HSPs)
chr1 (342-378)||(31771393-31771429)
chr1 (343-377)||(32440669-32440703)
chr1 (342-378)||(7608405-7608441)
[»] chr2 (2 HSPs)
chr2 (343-377)||(4453778-4453812)
chr2 (343-377)||(9208570-9208604)
[»] chr7 (1 HSPs)
chr7 (341-377)||(21820194-21820230)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 48 - 344
Target Start/End: Complemental strand, 36324552 - 36324260
Alignment:
Q  48 aaattcttgattatttatctagtgcaattctttcagttctctttccaatgacaaaaatgcaaacttttattatgatttcacaactagttagaatatgatc 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36324552 aaattcttgattatttatctagtgcaattctttcagttctctttccaatgacaaaaatgcaaacttttattatgatttcacaactagttagaatatgatc 36324453  T
Q  148 gagactaatccttgttagcatttatgaaagataaaaaatgctaatcaaaattactcaatcgatcaacagctgatgatttgatatcttactagctagtaca 247  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    ||||||||    
T  36324452 gagagtaatccttgttagcatttatgaaagataaaaaatgctaatcaaaattactcaatcaatcaacagctgatgatttgatatctta----ctagtaca 36324357  T
Q  248 tgccttacaagaaaagattattcataaagctattagagatgaactcgctgnnnnnnnnnnnntttggacaggcatattcctacctatcccaagttat 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||| |||||    
T  36324356 tgccttacaagaaaagattattcataaagctattagagatgaactcgctgaaaaaagaaaaatttggacaggcatattcctacctatcccaggttat 36324260  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 36324628 - 36324591
Alignment:
Q  12 atgaaaaactacacaacagagtggtgcactccttacaa 49  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36324628 atgaaaaactacacaacagagtggtgcactccttacaa 36324591  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 407
Target Start/End: Original strand, 31687908 - 31687946
Alignment:
Q  369 acactccaaaccctaattttacttttttaggcgccaaac 407  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  31687908 acactccaaaccctaattctacttttttaggcgccaaac 31687946  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 377
Target Start/End: Complemental strand, 46234021 - 46233983
Alignment:
Q  339 agttatctaacttattcataatcctagttaacactccaa 377  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  46234021 agttatctaacttattcctaatcctagttaacactccaa 46233983  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 19766049 - 19766090
Alignment:
Q  366 ttaacactccaaaccctaattttacttttttaggcgccaaac 407  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  19766049 ttaacactccaaaccctaatcctacttttttaggcgccaaac 19766090  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 36306817 - 36306737
Alignment:
Q  140 atatgatcgagactaatccttgttagcatttatgaaagataaaaaatgctaatcaaaattactcaatcgatcaacagctgat 221  Q
    |||||||| ||||||||||||  |||||||| || ||||| |||||||||||| ||||||| |||||| | ||||| |||||    
T  36306817 atatgatccagactaatccttaatagcatttgtggaagat-aaaaatgctaataaaaattattcaatcaagcaacatctgat 36306737  T

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Target: scaffold0003 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 343 - 407
Target Start/End: Complemental strand, 43234 - 43170
Alignment:
Q  343 atctaacttattcataatcctagttaacactccaaaccctaattttacttttttaggcgccaaac 407  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  43234 atctaacttattcctaatcgtagttaacactccaaaccctaattctacttttttaggcgccaaac 43170  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 27444127 - 27444191
Alignment:
Q  343 atctaacttattcataatcctagttaacactccaaaccctaattttacttttttaggcgccaaac 407  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  27444127 atctaacttattcctaatcgtagttaacactccaaaccctaattctacttttttaggcgccaaac 27444191  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 377
Target Start/End: Original strand, 31444771 - 31444805
Alignment:
Q  343 atctaacttattcataatcctagttaacactccaa 377  Q
    ||||||||||||| |||||||||||||||||||||    
T  31444771 atctaacttattcctaatcctagttaacactccaa 31444805  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 26720237 - 26720301
Alignment:
Q  343 atctaacttattcataatcctagttaacactccaaaccctaattttacttttttaggcgccaaac 407  Q
    ||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  26720237 atctaacttattcctaatcctagttaacactccaaaccctaatcctacttttttaggcgccaaac 26720301  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 377
Target Start/End: Complemental strand, 32651324 - 32651290
Alignment:
Q  343 atctaacttattcataatcctagttaacactccaa 377  Q
    ||||||||||||| |||||||||||||||||||||    
T  32651324 atctaacttattcctaatcctagttaacactccaa 32651290  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 377
Target Start/End: Complemental strand, 38467765 - 38467731
Alignment:
Q  343 atctaacttattcataatcctagttaacactccaa 377  Q
    |||||||||||| ||||||||||||||||||||||    
T  38467765 atctaacttatttataatcctagttaacactccaa 38467731  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 377
Target Start/End: Original strand, 3649873 - 3649905
Alignment:
Q  345 ctaacttattcataatcctagttaacactccaa 377  Q
    ||||||||||| |||||||||||||||||||||    
T  3649873 ctaacttattcctaatcctagttaacactccaa 3649905  T

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Target: scaffold0014 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 32615 - 32679
Alignment:
Q  343 atctaacttattcataatcctagttaacactccaaaccctaattttacttttttaggcgccaaac 407  Q
    ||||||||||||  |||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  32615 atctaacttatttctaatcctagttaacactccaaaccctaatcctacttttttaggcgccaaac 32679  T

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Target: scaffold0152 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 10230 - 10271
Alignment:
Q  366 ttaacactccaaaccctaattttacttttttaggcgccaaac 407  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  10230 ttaacactccaaaccctaattctacttttttaggcgccaaac 10271  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 377
Target Start/End: Complemental strand, 44663739 - 44663703
Alignment:
Q  341 ttatctaacttattcataatcctagttaacactccaa 377  Q
    ||||||||||||||| |||||||||||||||||||||    
T  44663739 ttatctaacttattcctaatcctagttaacactccaa 44663703  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 366 - 405
Target Start/End: Original strand, 19962065 - 19962104
Alignment:
Q  366 ttaacactccaaaccctaattttacttttttaggcgccaa 405  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  19962065 ttaacacttaaaaccctaattttacttttttaggcgccaa 19962104  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 377
Target Start/End: Original strand, 35348989 - 35349025
Alignment:
Q  341 ttatctaacttattcataatcctagttaacactccaa 377  Q
    ||||||||||||||  |||||||||||||||||||||    
T  35348989 ttatctaacttatttctaatcctagttaacactccaa 35349025  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 31771429 - 31771393
Alignment:
Q  342 tatctaacttattcataatcctagttaacactccaaa 378  Q
    |||||||||||||| ||||||||||||||||||||||    
T  31771429 tatctaacttattcctaatcctagttaacactccaaa 31771393  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 377
Target Start/End: Complemental strand, 32440703 - 32440669
Alignment:
Q  343 atctaacttattcataatcctagttaacactccaa 377  Q
    ||||||||||||| |||||||||||||||||||||    
T  32440703 atctaacttattcctaatcctagttaacactccaa 32440669  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 7608441 - 7608405
Alignment:
Q  342 tatctaacttattcataatcctagttaacactccaaa 378  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  7608441 tatctaacttattcctaatcctagttaaaactccaaa 7608405  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 377
Target Start/End: Original strand, 4453778 - 4453812
Alignment:
Q  343 atctaacttattcataatcctagttaacactccaa 377  Q
    ||||||||||||| |||||||||||||||||||||    
T  4453778 atctaacttattcctaatcctagttaacactccaa 4453812  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 377
Target Start/End: Original strand, 9208570 - 9208604
Alignment:
Q  343 atctaacttattcataatcctagttaacactccaa 377  Q
    ||||||||||||| |||||||||||||||||||||    
T  9208570 atctaacttattcctaatcctagttaacactccaa 9208604  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 377
Target Start/End: Complemental strand, 21820230 - 21820194
Alignment:
Q  341 ttatctaacttattcataatcctagttaacactccaa 377  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  21820230 ttatctaacttattcctaatcctaattaacactccaa 21820194  T

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