View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6552_low_14 (Length: 314)

Name: NF6552_low_14
Description: NF6552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6552_low_14
NF6552_low_14
[»] chr3 (22 HSPs)
chr3 (53-200)||(13844336-13844484)
chr3 (17-143)||(10657964-10658091)
chr3 (13-143)||(10516664-10516795)
chr3 (198-282)||(13844105-13844186)
chr3 (198-305)||(11782995-11783101)
chr3 (150-198)||(11782775-11782823)
chr3 (54-123)||(10183408-10183478)
chr3 (86-121)||(10104080-10104115)
chr3 (86-121)||(10214952-10214987)
chr3 (86-121)||(10223693-10223728)
chr3 (88-121)||(10031184-10031217)
chr3 (84-116)||(10256544-10256576)
chr3 (88-119)||(9837889-9837920)
chr3 (88-119)||(9848767-9848798)
chr3 (86-121)||(10076350-10076385)
chr3 (84-119)||(10180432-10180467)
chr3 (92-143)||(10662679-10662730)
chr3 (47-140)||(10541088-10541182)
chr3 (88-117)||(10126129-10126158)
chr3 (84-116)||(10028874-10028906)
chr3 (84-116)||(10123775-10123807)
chr3 (13-41)||(11782742-11782770)
[»] chr5 (1 HSPs)
chr5 (86-121)||(26793535-26793570)


Alignment Details
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 53 - 200
Target Start/End: Original strand, 13844336 - 13844484
Alignment:
Q  53 taaaggtagattcaagaagacttatttgt-gcgtaagaaacaaaatttgaaagctggaaagcaaagctcacaaatggttaatggacccacatatggaaaa 151  Q
    |||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||| ||||||    
T  13844336 taaaggtagactcaagaagacttatttgttgtgtaagaaacaaaatttgaaagctggaaagcatagctcataaatggttaatgaacccacatagggaaaa 13844435  T
Q  152 gagtaaacactgtccaattaaaaattgccattggcatttgtggacttaa 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13844436 gagtaaacaccgtccaattaaaaattgccattggcatttgtggacttaa 13844484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 10658091 - 10657964
Alignment:
Q  17 agaaatgtgaatggatacagtaatgtttttagatggtaaaggtagattcaagaagacttatttg-tgcgtaagaaacaaaatttgaaagctggaaagcaa 115  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  10658091 agaaatgtgaatggatacagtaatgtttttggatggtaaaggtagactcaagaagacttatttgttgcgtaagaaacaaaatttaaaagctggaaagcaa 10657992  T
Q  116 agctcacaaatggttaatggacccacat 143  Q
    || |||  | || |||||||||||||||    
T  10657991 aggtcatcagtgattaatggacccacat 10657964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 10516795 - 10516664
Alignment:
Q  13 ttgaagaaatgtgaatggatacagtaatgtttttagatggtaaaggtagattcaagaagacttatttg-tgcgtaagaaacaaaatttgaaagctggaaa 111  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  10516795 ttgaagatatgtgaatggatacagtaatgtttttggatggtaaaggtagactcaggaagacttatttgttgcgtaagaaacaaaatttgaaagctggaaa 10516696  T
Q  112 gcaaagctcacaaatggttaatggacccacat 143  Q
    ||| || |||  | || ||| |||||||||||    
T  10516695 gcataggtcatcagtgattactggacccacat 10516664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 198 - 282
Target Start/End: Original strand, 13844105 - 13844186
Alignment:
Q  198 taataagtaaataaatcattttaagaaatatataattaccaagacgtgtattgagaataccaaatagttgcaaaatgcatttgat 282  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||    
T  13844105 taataagtaaataaatcaatttaagaa-tatataattaccaagacgtgtattgagaataccaaataattgc--aatgcatttgat 13844186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 305
Target Start/End: Original strand, 11782995 - 11783101
Alignment:
Q  198 taataagtaaataaatcattttaagaaatatataattaccaagacgtgtattgag-aataccaaatagttgcaaaatgcatttgatgcctttccacgagt 296  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||||||||| || |||||| |||| ||||  |||| ||||| ||| ||||||| |||    
T  11782995 taataagtaaataaatcaaattaagaaatatataattagcaagacgtgtattaagaaatacctaataattgc--aatgtatttgctgcttttccacaagt 11783092  T
Q  297 ctttcatct 305  Q
    |||||||||    
T  11783093 ctttcatct 11783101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 11782775 - 11782823
Alignment:
Q  150 aagagtaaacactgtccaattaaaaattgccattggcatttgtggactt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11782775 aagagtaaacactgtccaattaaaaattgccattggcatttgtggactt 11782823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 10183478 - 10183408
Alignment:
Q  54 aaaggtagattcaagaagacttatttgt-gcgtaagaaacaaaatttgaaagctggaaagcaaagctcaca 123  Q
    ||||||||| |||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||    
T  10183478 aaaggtagactcaagaagacttatttgttgggtatgaaactaaatttgaaagctggaaagcaaagctcaca 10183408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 10104115 - 10104080
Alignment:
Q  86 aagaaacaaaatttgaaagctggaaagcaaagctca 121  Q
    ||||||||||||||||||||||||||||||||||||    
T  10104115 aagaaacaaaatttgaaagctggaaagcaaagctca 10104080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 10214987 - 10214952
Alignment:
Q  86 aagaaacaaaatttgaaagctggaaagcaaagctca 121  Q
    ||||||||||||||||||||||||||||||||||||    
T  10214987 aagaaacaaaatttgaaagctggaaagcaaagctca 10214952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 10223728 - 10223693
Alignment:
Q  86 aagaaacaaaatttgaaagctggaaagcaaagctca 121  Q
    ||||||||||||||||||||||||||||||||||||    
T  10223728 aagaaacaaaatttgaaagctggaaagcaaagctca 10223693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 121
Target Start/End: Complemental strand, 10031217 - 10031184
Alignment:
Q  88 gaaacaaaatttgaaagctggaaagcaaagctca 121  Q
    ||||||||||||||||||||||||||||||||||    
T  10031217 gaaacaaaatttgaaagctggaaagcaaagctca 10031184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 10256576 - 10256544
Alignment:
Q  84 gtaagaaacaaaatttgaaagctggaaagcaaa 116  Q
    |||||||||||||||||||||||||||||||||    
T  10256576 gtaagaaacaaaatttgaaagctggaaagcaaa 10256544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 9837920 - 9837889
Alignment:
Q  88 gaaacaaaatttgaaagctggaaagcaaagct 119  Q
    ||||||||||||||||||||||||||||||||    
T  9837920 gaaacaaaatttgaaagctggaaagcaaagct 9837889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 9848798 - 9848767
Alignment:
Q  88 gaaacaaaatttgaaagctggaaagcaaagct 119  Q
    ||||||||||||||||||||||||||||||||    
T  9848798 gaaacaaaatttgaaagctggaaagcaaagct 9848767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 10076385 - 10076350
Alignment:
Q  86 aagaaacaaaatttgaaagctggaaagcaaagctca 121  Q
    ||||||||||||||||||||||||||| ||||||||    
T  10076385 aagaaacaaaatttgaaagctggaaagtaaagctca 10076350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 119
Target Start/End: Complemental strand, 10180467 - 10180432
Alignment:
Q  84 gtaagaaacaaaatttgaaagctggaaagcaaagct 119  Q
    |||||||||||||||||||||||||| |||||||||    
T  10180467 gtaagaaacaaaatttgaaagctggagagcaaagct 10180432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 10662730 - 10662679
Alignment:
Q  92 caaaatttgaaagctggaaagcaaagctcacaaatggttaatggacccacat 143  Q
    |||||||||||||||||||||||||| |||  | || |||||||||||||||    
T  10662730 caaaatttgaaagctggaaagcaaagttcatcagtgattaatggacccacat 10662679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 10541182 - 10541088
Alignment:
Q  47 agatggtaaaggtagattcaagaagacttatttgtgcg-taagaaacaaaatttgaaagctggaaagcaaagctcacaaatggttaatggaccca 140  Q
    |||| ||||| ||||| |||||||||||| |||||  | ||||||||||| || |||||||||||| ||| ||| || | || ||||||||||||    
T  10541182 agatagtaaacgtagactcaagaagacttgtttgttaggtaagaaacaaagttagaaagctggaaaacaaggcttaccattgtttaatggaccca 10541088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Complemental strand, 10126158 - 10126129
Alignment:
Q  88 gaaacaaaatttgaaagctggaaagcaaag 117  Q
    ||||||||||||||||||||||||||||||    
T  10126158 gaaacaaaatttgaaagctggaaagcaaag 10126129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 10028906 - 10028874
Alignment:
Q  84 gtaagaaacaaaatttgaaagctggaaagcaaa 116  Q
    |||||||||||||||||||||||| ||||||||    
T  10028906 gtaagaaacaaaatttgaaagctgaaaagcaaa 10028874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 10123807 - 10123775
Alignment:
Q  84 gtaagaaacaaaatttgaaagctggaaagcaaa 116  Q
    ||||||||||| |||||||||||||||||||||    
T  10123807 gtaagaaacaacatttgaaagctggaaagcaaa 10123775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 11782742 - 11782770
Alignment:
Q  13 ttgaagaaatgtgaatggatacagtaatg 41  Q
    |||||||||||||||||||||||||||||    
T  11782742 ttgaagaaatgtgaatggatacagtaatg 11782770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 26793570 - 26793535
Alignment:
Q  86 aagaaacaaaatttgaaagctggaaagcaaagctca 121  Q
    ||||||||||||||||||||||||||||||||||||    
T  26793570 aagaaacaaaatttgaaagctggaaagcaaagctca 26793535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University