View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6552_low_16 (Length: 286)
Name: NF6552_low_16
Description: NF6552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6552_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 10 - 286
Target Start/End: Complemental strand, 16511550 - 16511274
Alignment:
| Q |
10 |
catcatcacctcccttctcaatttttgtcatccaatacagagcttgactctggtaaggctttagactacacatcagtgtctttggggcttccttctccta |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16511550 |
catcatcacctcccttctcaatttttgtcatccaatacagagcttgactctggtaaggctttagactacacatcagtgtctttggggcttccttctccta |
16511451 |
T |
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| Q |
110 |
aagatgtgaaagacataaaaaggtcagttacgcaatagagaagtcgcagccaaacaattgaaattggaacacattttatatacctccaggtcaaagactt |
209 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16511450 |
aagatgtgaaagacataaaaaggtcagttacacaatagagaagtcgcagccaaacaattgaaattggaacacattttatatacctccaggtcaaagactt |
16511351 |
T |
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| Q |
210 |
ctgcagctccaacaagtttgttcaaagctgactccgaaagtgcttgttcatcctcagttgttgctggaagtggctca |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16511350 |
ctgcagctccaacaagtttgttcaaagctgactccgaaagtgcttgttcatcctcagttgttgctggaagtggctca |
16511274 |
T |
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