View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6552_low_18 (Length: 251)

Name: NF6552_low_18
Description: NF6552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6552_low_18
NF6552_low_18
[»] chr3 (4 HSPs)
chr3 (1-244)||(11897148-11897391)
chr3 (4-245)||(26432605-26432846)
chr3 (88-172)||(23424570-23424654)
chr3 (130-179)||(49149802-49149851)
[»] chr8 (2 HSPs)
chr8 (1-244)||(23132489-23132732)
chr8 (88-237)||(26587231-26587380)
[»] chr1 (4 HSPs)
chr1 (1-244)||(20284849-20285092)
chr1 (79-246)||(50236550-50236717)
chr1 (91-172)||(50451967-50452048)
chr1 (130-188)||(23465403-23465461)
[»] chr2 (11 HSPs)
chr2 (1-244)||(14653584-14653827)
chr2 (91-237)||(26791325-26791471)
chr2 (34-167)||(35135159-35135292)
chr2 (34-167)||(40328252-40328385)
chr2 (79-188)||(16322502-16322611)
chr2 (94-167)||(3779048-3779121)
chr2 (91-167)||(573266-573342)
chr2 (86-172)||(42403209-42403295)
chr2 (91-236)||(177504-177649)
chr2 (106-167)||(19265490-19265551)
chr2 (91-142)||(35062956-35063007)
[»] scaffold0036 (1 HSPs)
scaffold0036 (76-181)||(75967-76072)
[»] chr5 (3 HSPs)
chr5 (91-197)||(32874457-32874563)
chr5 (91-245)||(7817131-7817285)
chr5 (86-188)||(6641008-6641110)
[»] chr4 (3 HSPs)
chr4 (94-245)||(54477407-54477558)
chr4 (88-191)||(46784469-46784572)
chr4 (91-172)||(3881787-3881868)
[»] chr6 (4 HSPs)
chr6 (88-188)||(24990660-24990760)
chr6 (88-245)||(24893833-24893990)
chr6 (75-188)||(13599639-13599752)
chr6 (91-198)||(27852952-27853059)
[»] chr7 (4 HSPs)
chr7 (75-188)||(16769946-16770059)
chr7 (75-188)||(27781614-27781727)
chr7 (94-164)||(1353794-1353864)
chr7 (91-236)||(1579159-1579304)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 11897391 - 11897148
Alignment:
Q  1 aataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  11897391 aataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggacgactgctgagttgatagtagctgaaagcttttcca 11897292  T
Q  101 tgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897291 tgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagta 11897192  T
Q  201 actaggagaagctacgcaatgcatgatgagcttgatgatgatgt 244  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  11897191 actaggagaagctacgcaatgcatgatgagcttgatggtgatgt 11897148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 26432605 - 26432846
Alignment:
Q  4 aggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttccatgc 103  Q
    ||||| ||||||||||||||||||||||| |||||||| || ||| ||||||||||||||| ||| || |||||||||||||| || |||||||||||||    
T  26432605 aggaggtgggataaatgcggccccgtaggagtgatttgaatcggttcccatcttccttgggtgacggcggagttgatagcagcggatagcttttccatgc 26432704  T
Q  104 aaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaact 203  Q
    ||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||||||||||||||||  |    
T  26432705 aaatgatgaagagataaggggacaatggatcaccttgtcggagaccatgagaaggtttgaaagacggcaacttgttcccattccaaagtatagagtagtt 26432804  T
Q  204 aggagaagctacgcaatgcatgatgagcttgatgatgatgtc 245  Q
     |  ||||  || |||||||||||||| |||||| |||||||    
T  26432805 tgatgaagagacacaatgcatgatgagtttgatggtgatgtc 26432846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 23424654 - 23424570
Alignment:
Q  88 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca 172  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||    
T  23424654 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggca 23424570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 49149802 - 49149851
Alignment:
Q  130 ggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgtt 179  Q
    |||||||||||||| || ||||||| |||||||||| ||||||| |||||    
T  49149802 ggatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgtt 49149851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 23132489 - 23132732
Alignment:
Q  1 aataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttcca 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132489 aataggagatgggataaatggggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttcca 23132588  T
Q  101 tgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagta 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132589 tgcaaaggatgaaaagataaggggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagta 23132688  T
Q  201 actaggagaagctacgcaatgcatgatgagcttgatgatgatgt 244  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||    
T  23132689 actaggagaagctacgcaatgcatgatgaacttgatggtgatgt 23132732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 237
Target Start/End: Complemental strand, 26587380 - 26587231
Alignment:
Q  88 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc 187  Q
    ||||| || ||||| ||||| ||||| || || || ||||| || |||||||||||||||||||||| ||||||||| || ||||| ||||| || || |    
T  26587380 gaaagtttctccatacaaagaatgaagaggtagggagacaatgggtcaccttgtcggaggccatgagtaggcttgaaggggggcaatttgttaccatttc 26587281  T
Q  188 aaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatg 237  Q
    |||| || | | |  |||  ||||  ||||||||||||||||| ||||||    
T  26587280 aaaggatggtgaaggtagatgaagtgacgcaatgcatgatgagtttgatg 26587231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 20285092 - 20284849
Alignment:
Q  1 aataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20285092 aataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttcca 20284993  T
Q  101 tgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||   |||||||||||||||||||||||    
T  20284992 tgcaaaggatgaaaagataaggggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttccaaagtatagagta 20284893  T
Q  201 actaggagaagctacgcaatgcatgatgagcttgatgatgatgt 244  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  20284892 actaggagaagctacgcaatgcatgatgagcttgatggtgatgt 20284849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 246
Target Start/End: Original strand, 50236550 - 50236717
Alignment:
Q  79 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgt 178  Q
    |||||| |||| || || ||||| || | ||||||||| |||||||| | ||||||||||| || ||||||||||| |||||||||||| |||| |||||    
T  50236550 atagcaactgatagtttctccatacacaagatgaaaaggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgt 50236649  T
Q  179 tcccgttccaaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgtcc 246  Q
    |||||||||| |  ||||||||  | || || |  || |||||||||||||| ||| || ||||||||    
T  50236650 tcccgttccataagatagagtaggtgggtgaggagacacaatgcatgatgagtttggtggtgatgtcc 50236717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 50452048 - 50451967
Alignment:
Q  91 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca 172  Q
    ||||| ||||| ||||| ||||| || ||||| || | |||||||||||||||||||||||| | ||| |||||| ||||||    
T  50452048 agcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggca 50451967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 23465461 - 23465403
Alignment:
Q  130 ggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcca 188  Q
    |||||||||||||| || ||||||| |||||||||| ||||||| ||||| || |||||    
T  23465461 ggatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgttaccattcca 23465403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 14653584 - 14653827
Alignment:
Q  1 aataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttcca 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||    
T  14653584 aataggagatgggataaatgcggccccgtaggagtgatttggatgggtgcccatcttccttgggcaactgctgagtttatagcagcggatagcttttcca 14653683  T
Q  101 tgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagta 200  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14653684 tgcaaaggatgaaaaaataaggggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagagta 14653783  T
Q  201 actaggagaagctacgcaatgcatgatgagcttgatgatgatgt 244  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||    
T  14653784 actcggagaagctacgcaatgcatgatgagcttgatggtgatgt 14653827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 237
Target Start/End: Complemental strand, 26791471 - 26791325
Alignment:
Q  91 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 190  Q
    ||||| ||||||||||| || ||||| || ||||| | ||||||||| || | ||||||||||| ||||| |||||| |||||| | || || |||||||    
T  26791471 agcttctccatgcaaagaataaaaaggtacggggaaagcggatcaccctgcctgaggccatgagtaggctcgaaaggaggcaacctatttccattccaaa 26791372  T
Q  191 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatg 237  Q
    | |||||| | || |  ||||  ||||||||||||||||||||||||    
T  26791371 gaatagagaagctggatgaagtaacgcaatgcatgatgagcttgatg 26791325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 167
Target Start/End: Original strand, 35135159 - 35135292
Alignment:
Q  34 gtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggat 133  Q
    |||||||| || ||| ||||||| ||||||  ||| || || ||||| ||| | || || |||||||| || ||||||||||||||||| |||||||| |    
T  35135159 gtgatttgtatcggttcccatctcccttggttgacagcggaattgattgcaacagagagtttttccatacataggatgaaaagataaggagacaacgggt 35135258  T
Q  134 caccttgtcggaggccatgagaaggcttgaaagg 167  Q
    ||||||| || || ||||||| ||||||||||||    
T  35135259 caccttgacgaagtccatgagtaggcttgaaagg 35135292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 40328385 - 40328252
Alignment:
Q  34 gtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggat 133  Q
    |||||||| || ||| ||||||| ||||||  ||| || || ||||| ||| | || || |||||||| || ||||||||||||||||| |||||||| |    
T  40328385 gtgatttgtatcggttcccatctcccttggttgacagcggaattgattgcaacagagagtttttccatacataggatgaaaagataaggagacaacgggt 40328286  T
Q  134 caccttgtcggaggccatgagaaggcttgaaagg 167  Q
    ||||||| || || ||||||| ||||||||||||    
T  40328285 caccttgacgaagtccatgagtaggcttgaaagg 40328252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 16322611 - 16322502
Alignment:
Q  79 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgt 178  Q
    |||||| | ||||| |||||||||||||| |||||||| || || || | ||| ||||||||||| ||||||||||  ||||||||||| |||| |||||    
T  16322611 atagcaacagaaagtttttccatgcaaagtatgaaaaggtacggagaaagcgggtcaccttgtcgaaggccatgagtgggcttgaaaggaggcatcttgt 16322512  T
Q  179 tcccgttcca 188  Q
    | || |||||    
T  16322511 ttccattcca 16322502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 3779048 - 3779121
Alignment:
Q  94 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaagg 167  Q
    |||||||| || ||||||||||||||||| |||| ||| |||||||| || || ||||||| ||||||||||||    
T  3779048 ttttccatacagaggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaagg 3779121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 573342 - 573266
Alignment:
Q  91 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaagg 167  Q
    ||||| ||||||||||||||||| || ||||| || | |||||||||||||| ||||||||| ||||| || |||||    
T  573342 agcttctccatgcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggccatgggaaggtttaaaagg 573266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 42403209 - 42403295
Alignment:
Q  86 ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca 172  Q
    ||||||||||||||||||| || || || |||||||| || |  || |||||||| |||||||||||||  ||||||||||| ||||    
T  42403209 ctgaaagcttttccatgcacagtataaatagataaggtgagagagggtcaccttgccggaggccatgagtgggcttgaaaggaggca 42403295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 236
Target Start/End: Complemental strand, 177649 - 177504
Alignment:
Q  91 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 190  Q
    |||||||||||||| | |||||| || ||||| ||||| || ||||||||||  || ||||||| |||||||| ||| ||| | ||||| || |||||||    
T  177649 agcttttccatgcagatgatgaataggtaaggagacaaagggtcaccttgtcttagaccatgagtaggcttgataggaggccatttgtttccattccaaa 177550  T
Q  191 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgat 236  Q
    | | |||| |  | | |||||  || |||||||||||||| |||||    
T  177549 gaacagagaatgttgaagaagtgacacaatgcatgatgagtttgat 177504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 19265551 - 19265490
Alignment:
Q  106 aggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaagg 167  Q
    ||||||||||||||||| |||| ||| |||||||| || || ||||||| ||||||||||||    
T  19265551 aggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaagg 19265490  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 35062956 - 35063007
Alignment:
Q  91 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtc 142  Q
    ||||||||||| ||||||||||||||||| ||||| |  |||||||||||||    
T  35062956 agcttttccatacaaaggatgaaaagatagggggatagtggatcaccttgtc 35063007  T

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Target: scaffold0036 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 76072 - 75967
Alignment:
Q  76 ttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaact 175  Q
    ||||||||| | || ||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||||| ||||||||| |  |||| ||    
T  76072 ttgatagcaacagagagcttttccatgcaaaggatgaaaagataaggggacaactggtcaccttgtctgagaccatgagtaggcttgaaggaaggcagct 75973  T
Q  176 tgttcc 181  Q
    ||||||    
T  75972 tgttcc 75967  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 32874457 - 32874563
Alignment:
Q  91 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 190  Q
    |||||||||||||||| |||||| | ||| || || | ||| || ||||| |||||||||||||||||||||||||| |||||||||||||| || ||||    
T  32874457 agcttttccatgcaaatgatgaataaatagggagagagcgggtctccttggcggaggccatgagaaggcttgaaaggaggcaacttgttcccatttcaaa 32874556  T
Q  191 gtataga 197  Q
    | |||||    
T  32874557 ggataga 32874563  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 245
Target Start/End: Complemental strand, 7817285 - 7817131
Alignment:
Q  91 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 190  Q
    ||||||||||||||||| |||||||| ||||| || || || ||||| |||| ||| ||||||| |||||||||||  || |  |||||||| ||||| |    
T  7817285 agcttttccatgcaaagaatgaaaaggtaaggagataaagggtcaccctgtctgagaccatgagtaggcttgaaagaaggaagtttgttcccattccata 7817186  T
Q  191 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgtc 245  Q
      ||||||||  | |  || | ||| ||||||||||||||||||||  |||||||    
T  7817185 aaatagagtagttggaggatgatacacaatgcatgatgagcttgattgtgatgtc 7817131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 188
Target Start/End: Original strand, 6641008 - 6641110
Alignment:
Q  86 ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgtt 185  Q
    ||||||| ||||||||||| |  ||||| || || || || | ||||||||||| ||||||||||||||  ||||||||||| | ||  ||||| |||||    
T  6641008 ctgaaagtttttccatgcacataatgaagaggtagggagagagcggatcaccttttcggaggccatgagtgggcttgaaaggggacattttgtttccgtt 6641107  T
Q  186 cca 188  Q
    |||    
T  6641108 cca 6641110  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 245
Target Start/End: Original strand, 54477407 - 54477558
Alignment:
Q  94 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagta 193  Q
    |||||||||||||| ||||| |||||||||||||| ||||||||||| || || ||||| | |||||||||||  || | |||||| || |||||||| |    
T  54477407 ttttccatgcaaagaatgaagagataaggggacaaaggatcaccttggcgcagaccatgtgtaggcttgaaagatggaagcttgtttccattccaaagga 54477506  T
Q  194 tagagtaactaggagaagctacgcaatgcatgatgagcttgatgatgatgtc 245  Q
    || ||||  | |  || |  || ||||||||||||||||||||| |||||||    
T  54477507 taaagtattttgatgatgaaacacaatgcatgatgagcttgatggtgatgtc 54477558  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 191
Target Start/End: Original strand, 46784469 - 46784572
Alignment:
Q  88 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc 187  Q
    ||||| |||| ||||||||||||||| || || || || |  |||||||||||||  |||||||||| ||| |||||||||||||| || || || ||||    
T  46784469 gaaagttttttcatgcaaaggatgaagaggtagggagatagaggatcaccttgtctaaggccatgagtaggtttgaaaggcggcaatttatttccattcc 46784568  T
Q  188 aaag 191  Q
    ||||    
T  46784569 aaag 46784572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 3881868 - 3881787
Alignment:
Q  91 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca 172  Q
    ||||||||||| ||||| ||||| || ||| | || | |||||||||||||||||||||||| | ||| |||||| ||||||    
T  3881868 agcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggca 3881787  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 24990660 - 24990760
Alignment:
Q  88 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc 187  Q
    |||||||| ||||||||||| |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| |||||||    
T  24990660 gaaagcttctccatgcaaagaatgaaaagataaggagagagcgggtcaccttgtctgagaccatgggtgggcttgaaagggggcattttgttaccgttcc 24990759  T
Q  188 a 188  Q
    |    
T  24990760 a 24990760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 245
Target Start/End: Original strand, 24893833 - 24893990
Alignment:
Q  88 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc 187  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| || ||||    
T  24893833 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttaccattcc 24893932  T
Q  188 aaagtatagagtaactaggagaagct-acgcaatgcatgatgagcttgatgatgatgtc 245  Q
    | | ||| ||| ||   |||| || | || ||||||||||||||||||||| |||||||    
T  24893933 ataatatggag-aatgtggaggaggtgacacaatgcatgatgagcttgatggtgatgtc 24893990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 13599752 - 13599639
Alignment:
Q  75 gttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaac 174  Q
    |||||| ||||||||||| |||||||| || | |||||| |||||||| || |  ||||||||||| |||||  |||||| |||||||||  |||| |||    
T  13599752 gttgatggcagctgaaagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgacggagatcatgagtaggcttgaattgcggaaac 13599653  T
Q  175 ttgttcccgttcca 188  Q
    ||||| || |||||    
T  13599652 ttgttaccattcca 13599639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 198
Target Start/End: Original strand, 27852952 - 27853059
Alignment:
Q  91 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 190  Q
    ||||||||||| ||||||||||| |  ||||| || || || || |||||||  || |||||||||||||||||||  ||||  ||||| ||||||||||    
T  27852952 agcttttccatacaaaggatgaataagtaaggagataaagggtccccttgtcttagaccatgagaaggcttgaaagaaggcattttgtttccgttccaaa 27853051  T
Q  191 gtatagag 198  Q
    | ||||||    
T  27853052 gaatagag 27853059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 188
Target Start/End: Original strand, 16769946 - 16770059
Alignment:
Q  75 gttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaac 174  Q
    |||||| || ||||| || |||||||| || | |||||| |||||||| || |  |||||||||||||| || ||||||| ||| |||||| |||||||     
T  16769946 gttgatggctgctgagagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaat 16770045  T
Q  175 ttgttcccgttcca 188  Q
    ||||| || |||||    
T  16770046 ttgttaccattcca 16770059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 188
Target Start/End: Original strand, 27781614 - 27781727
Alignment:
Q  75 gttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaac 174  Q
    |||||||||| |  ||||||| |||||||| |||||||| || ||||| || |  || |||||||||| |||||||||||  ||||| || || ||||      
T  27781614 gttgatagcaaccaaaagcttctccatgcagaggatgaagaggtaaggtgaaagagggtcaccttgtctgaggccatgagttggcttaaatggaggcatt 27781713  T
Q  175 ttgttcccgttcca 188  Q
    ||||||||||||||    
T  27781714 ttgttcccgttcca 27781727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 1353794 - 1353864
Alignment:
Q  94 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaa 164  Q
    |||||||| ||||| ||||||||||| || || |  ||||||||||||  ||||||||||| |||||||||    
T  1353794 ttttccatacaaagaatgaaaagatatggtgagagtggatcaccttgtatgaggccatgagtaggcttgaa 1353864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 236
Target Start/End: Original strand, 1579159 - 1579304
Alignment:
Q  91 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa 190  Q
    ||||||||||||||||| || || || |||||||| | ||||||||| |||| ||| ||||||| ||| |  || || ||||||||||| |  ||| | |    
T  1579159 agcttttccatgcaaagaataaagaggtaaggggagagcggatcaccctgtctgagcccatgagtaggatgaaagggaggcaacttgtttctattctaga 1579258  T
Q  191 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgat 236  Q
    | |||||| || | | |||||  || |||||||||||||| |||||    
T  1579259 gaatagagaaagttgaagaagaaacacaatgcatgatgagattgat 1579304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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