View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6552_low_20 (Length: 240)
Name: NF6552_low_20
Description: NF6552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6552_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 6132912 - 6132680
Alignment:
| Q |
1 |
ttacggtgcaagacatctacaacgccttcgtcttgcttgttgctataacgtaacggatcaagaattttgtgaagctgttgaaaagcttcctcaattagag |
100 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6132912 |
ttacagtgcaagacatttacaacgccttcgtcttgcttgttgctataacgtaacggatcaagaattttgtgaagctgttgaatagcttcctcaattagag |
6132813 |
T |
|
| Q |
101 |
gaacttgatatatcactcagcaacctaactcatcattcttttgaagccattggccgatgttgccctcgattgaaaacctttaaattcaacattcaagcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6132812 |
gaacttgatatatcactcagcaacctaactcatcattcttttgaagccattggccgaagttgccctcgattgaaaacctttaaatttaacattcaagcat |
6132713 |
T |
|
| Q |
201 |
acaaatatccacgcgttgaagatgatgatgatg |
233 |
Q |
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| T |
6132712 |
acaaatatccacgcgttgaagatgatgatgatg |
6132680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 6043229 - 6043431
Alignment:
| Q |
1 |
ttacggtgcaagacatctacaacgccttcgtcttgcttgttgctataacgtaacggatcaagaattttgtgaagctgttgaaaagcttcctcaattagag |
100 |
Q |
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|||| ||||||| || ||| ||||||||||||| ||||||||| |||||| ||| ||| ||| ||||||| || ||||||||||||||| | ||| |
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| T |
6043229 |
ttacagtgcaagtcaagtacgacgccttcgtcttttatgttgctatggcgtaacagatgaaggattgtgtgaagttgctgaaaagcttcctcagctggag |
6043328 |
T |
|
| Q |
101 |
gaacttgatatatcactcagcaacctaactcatcattcttttgaagccattggccgatgttgccctcgattgaaaacctttaaattcaacattcaagcat |
200 |
Q |
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| T |
6043329 |
gaacttgatataacaatcagcagcttgtccaatgaacctttggaagccattggccgaggttgccctcaattgaaaacctttaaattcaacattgaaggat |
6043428 |
T |
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| Q |
201 |
aca |
203 |
Q |
| |
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||| |
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| T |
6043429 |
aca |
6043431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 6053312 - 6053537
Alignment:
| Q |
8 |
gcaagacatctacaacgccttcgtcttgcttgttgctataacgtaacggatcaagaattttgtgaagctgttgaaaagcttcctcaattagaggaacttg |
107 |
Q |
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||||| ||||||||||||||||||||||| | ||||| | | || | ||| ||| ||| ||||| |||| ||||||| ||||| ||||||||||||| |
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| T |
6053312 |
gcaagtcatctacaacgccttcgtcttgcatcttgctggagcatatcagatgaaggattgtgtgatgctgctgaaaagtttccttgcttagaggaacttg |
6053411 |
T |
|
| Q |
108 |
atatatcactcagcaacctaactcatcattcttttgaagccattggccgatgttgccctcgattgaaaacctttaaattcaacattcaagcatacaaata |
207 |
Q |
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| T |
6053412 |
atatatcaatcagcaacttatccgatcgtcttttcgaaccaattggccgacgttgccctcgattgaaaacattgaaattcaacagtcaagggtacagaca |
6053511 |
T |
|
| Q |
208 |
tccacgcgttgaagatgatgatgatg |
233 |
Q |
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||||| | || || |||||||||||| |
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| T |
6053512 |
tccacacattcaatatgatgatgatg |
6053537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 6037783 - 6037895
Alignment:
| Q |
1 |
ttacggtgcaagacatctacaacgccttcgtcttgcttgttgctataacgtaacggatcaagaattttgtgaagctgttgaaaagcttcctcaattagag |
100 |
Q |
| |
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|||| ||||||| ||||||| |||||||| |||||| |||||||||| ||||| ||| ||| ||| ||||||| || |||||| || |||| |||||| |
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| T |
6037783 |
ttacagtgcaagtcatctacgacgccttcatcttgcatgttgctatagggtaacagatgaagtattgtgtgaagttgctgaaaaattttctcacttagag |
6037882 |
T |
|
| Q |
101 |
gaacttgatatat |
113 |
Q |
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||||||||||||| |
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| T |
6037883 |
gaacttgatatat |
6037895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 6037931 - 6037970
Alignment:
| Q |
149 |
attggccgatgttgccctcgattgaaaacctttaaattca |
188 |
Q |
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|||||||||||||||||||||||||||||| || |||||| |
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| T |
6037931 |
attggccgatgttgccctcgattgaaaacccttgaattca |
6037970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 6046672 - 6046722
Alignment:
| Q |
143 |
gaagccattggccgatgttgccctcgattgaaaacctttaaattcaacatt |
193 |
Q |
| |
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||||| |||||||||||||| |||| ||||||||||| |||||||||||| |
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| T |
6046672 |
gaagctattggccgatgttgtcctcagttgaaaaccttcaaattcaacatt |
6046722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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