View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6552_low_21 (Length: 231)
Name: NF6552_low_21
Description: NF6552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6552_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 62 - 212
Target Start/End: Original strand, 45782980 - 45783130
Alignment:
| Q |
62 |
atacacattcatttgaaaatatgggtaaaacatattgttgctttaagctgtgatggttcaattatagtaccctctgtcaatgcttcttgtgtgaaggtat |
161 |
Q |
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| T |
45782980 |
atacacattcatttgaaaatatgggtaaaacatattgttgctttaagctgtgatggttcaattatagtaccctctgtcaatgcttcttgtgtggtggtat |
45783079 |
T |
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| Q |
162 |
cctaatagatcacagaggtaatttcatatttggttttggtcaattagtagg |
212 |
Q |
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| T |
45783080 |
cctaatagatcacagaggtaatttcatatttggttttggtcaattagtagg |
45783130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 37592318 - 37592218
Alignment:
| Q |
15 |
aatgaatgaatgatcgaacaaatattcattaaaacatgcgtaaatacatacacattcatttgaaaatatgggtaaaacatattgttgctttaagctgtga |
114 |
Q |
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| T |
37592318 |
aatgaatgaataattgaacaa-tattcattaaaacatgcgtaaatacatacacattcatatgaaaatatgagtaaaacgtattgttgctttaagctgtga |
37592220 |
T |
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| Q |
115 |
tg |
116 |
Q |
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|| |
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| T |
37592219 |
tg |
37592218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 37709606 - 37709506
Alignment:
| Q |
15 |
aatgaatgaatgatcgaacaaatattcattaaaacatgcgtaaatacatacacattcatttgaaaatatgggtaaaacatattgttgctttaagctgtga |
114 |
Q |
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| T |
37709606 |
aatgaatgaataattgaacaa-tattcattaaaacatgcgtaaatacatacacattcatatgaaaatatgagtaaaacgtattgttgctttaagctgtga |
37709508 |
T |
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| Q |
115 |
tg |
116 |
Q |
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|| |
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| T |
37709507 |
tg |
37709506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 37694658 - 37694577
Alignment:
| Q |
35 |
aatattcattaaaacatgcgtaaatacatacacattcatttgaaaatatgggtaaaacatattgttgctttaagctgtgatg |
116 |
Q |
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| T |
37694658 |
aatattcattaaaacatgcgtaaatacatacacattcatatgaaaatatgagtaaaacgtattgttgctttaagctgtgatg |
37694577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 37821719 - 37821619
Alignment:
| Q |
15 |
aatgaatgaatgatcgaacaaatattcattaaaacatgcgtaaatacatacacattcatttgaaaatatgggtaaaacatattgttgctttaagctgtga |
114 |
Q |
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| T |
37821719 |
aatgaatgaataattgaacaa-tattcattaaaacatgcgtaaatacatacacattcatatgaaaatatgagtaaaatgtattgttgctttaagctgtga |
37821621 |
T |
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| Q |
115 |
tg |
116 |
Q |
| |
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|| |
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| T |
37821620 |
tg |
37821619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 37531111 - 37531011
Alignment:
| Q |
15 |
aatgaatgaatgatcgaacaaatattcattaaaacatgcgtaaatacatacacattcatttgaaaatatgggtaaaacatattgttgctttaagctgtga |
114 |
Q |
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| T |
37531111 |
aatgaatgaataattgaacaa-tatccattaaaacatgcgtaaatacatacacattcatatgaaattatgagtaaaacgtattgttgctttaagctgtga |
37531013 |
T |
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| Q |
115 |
tg |
116 |
Q |
| |
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|| |
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| T |
37531012 |
tg |
37531011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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