View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6552_low_4 (Length: 510)
Name: NF6552_low_4
Description: NF6552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6552_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 501
Target Start/End: Original strand, 16510819 - 16511302
Alignment:
| Q |
18 |
acctcttggagactagaggcttgtggtaacgttaactctgctgcatatccactgcttacactgttaaatatgctagagattgagccatataggaaggtaa |
117 |
Q |
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| T |
16510819 |
acctcttggagactagaggcttgtggtaatgttaactctgctgcatatccactgcttacactgttaaatatgctagagattgagccatataggaaggtaa |
16510918 |
T |
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| Q |
118 |
tgaatctctatttttaaattgttttgctctgtatgtttgttaatgttgcatttgtaatgagtttgttatttctaactaggctgatttcacccctgaggaa |
217 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16510919 |
tgaatctctattttgaaattgttttgctctgtaggtttgttaatgttgcatttgtaatgagtttgttatttctaactaggctgatttcacccctgaggaa |
16511018 |
T |
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| Q |
218 |
atgaaggctcgcaagcgggtgcttaaagtatgttcaactattttcattcttttttccctttttaatagtttgtagctttcatgatattgctgtttaaaat |
317 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16511019 |
atgaaggctcgaaagcgggtgcttaaagtatgttcaactattttcattcttttttccctttttaatagtttgtagctttcatgatattgctgtttaaaat |
16511118 |
T |
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| Q |
318 |
tgtgtattgaatcgaatatcattattgtaaatgtttctatattctttgttaagcaatatgtgcatattagaggactaatttttctgttcatattaccagc |
417 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16511119 |
tgtgtattgaattgaatgtcattattgtaaatgtttctatattctttgttaagcaatatgtgcatattagaggactaatttttctgttcatattaccagc |
16511218 |
T |
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| Q |
418 |
ttgactcagatgaagtttcagtaattcctgtcaataagcgaagaaaaggtgtcagtgagccacttccagcaacaactgatgatg |
501 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16511219 |
ttgactcagatgaagtttcagtaattcctgtcaataagcgaagaaaaggtgtcagtgagccacttccagcaacaactgaggatg |
16511302 |
T |
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