View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6552_low_6 (Length: 499)
Name: NF6552_low_6
Description: NF6552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6552_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 12 - 481
Target Start/End: Complemental strand, 7222669 - 7222200
Alignment:
| Q |
12 |
atatcacaactggtagcatagataggctgtgtttgtttacagactatcgaaaatgacctgtctattcctaacccataacaaaatcacacccttcaaataa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7222669 |
atatcacaactggtagcatagataggctgtgtttgtttacagactatcgaaaatgacctgtctattcctaacccataacaaaatcacacccttcaaataa |
7222570 |
T |
|
| Q |
112 |
aggaacacagaagaagtaccnnnnnnnnnnnnnnnnnnnnnngatggtaaaaatgcttaaactgtcacgctagcatgcaacccatgcaatctctgaactc |
211 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7222569 |
aggaacacagaagaagtacctatatatatagcatattatatagatggtaaaaatgcttaaactgtcacgctagcatgcaacccatgcaatctctgaactc |
7222470 |
T |
|
| Q |
212 |
agctcttatcctattcttccttacacaatctaattaatccatagtaccacctagctagctagctagctagtgagttgtagcataaatataacttgcagtt |
311 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7222469 |
agctcttatcctattcttccttacacaatctaattaatccatagtaccacctagctagctagctagctagggagttgtagcataaatataacttgcagtt |
7222370 |
T |
|
| Q |
312 |
tgattgcaataacgctcaaaaaagaagaaaattaagaacaagctattaaagtacaccaactttgttacgtaatatatatacttattccattgaatggtta |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7222369 |
tgattgcaataacgctcaaaaaagaagaaaattaagaacaagctattaaagtacaccaactttgttacgtaatatatatacttattccattgaatggtta |
7222270 |
T |
|
| Q |
412 |
attaggtgttcatgtttaggtgaccatgatgaataaccttaaattaatattgctcggaaccggtcagaat |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| |
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|
| T |
7222269 |
attaggtgttcatgtttaggtgaccatgatgaataaccttaaattaatcttgttctgaaccggtcagaat |
7222200 |
T |
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