View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6552_low_7 (Length: 493)
Name: NF6552_low_7
Description: NF6552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6552_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 12 - 476
Target Start/End: Original strand, 45373888 - 45374352
Alignment:
| Q |
12 |
atgaaagcgattagtagacgaagtacatagcatgtactaattaacaattattgaaagtatagtaagcattatgcaaagtttgcaaactattctgaggata |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45373888 |
atgaaagcgattagtagacgaagtacatagcatgtactaattaacaattattgaaagtatagtaagcattatgcaaagtttgcaaactattatgaggata |
45373987 |
T |
|
| Q |
112 |
aaatttaccagttgcaacttgcaagttgcattctcgataagttaacttaaactcaatgatttttgacacaagatttggcaacatattttcataaagtttg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45373988 |
aaatttaccagttgcaacttgcaagttgcattctcgataagttaacttaaacttaatgatttttgacacaagatttggcaacatattttcataaagtttg |
45374087 |
T |
|
| Q |
212 |
aaaactatgtgagctgcattagatgtcaaagatgcagtgcagcgatcccaaataactttcaacaacctaaccaacaactgaagaagtaggtttatgaaac |
311 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45374088 |
aaaactatgtgagttgcattagatgtcaaagatgcagtgcagcgatcccaaataactttcaacaaccgaaccaacaactgaagaagtaggtttatgaaac |
45374187 |
T |
|
| Q |
312 |
ttggaattggcctttgtgaagatttgtatgccagaagaaagataatcagtaaaatcatgaaataacacaaatgatataaggaagcctctattaggatttc |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45374188 |
ttggaattggcctttgtgaagatttgtatgccagaagaaagataatcggtaaaatcatgaaataacacaaatgatataaggaagcctctattaggatttc |
45374287 |
T |
|
| Q |
412 |
ttattacaatattagttgccgagtggcatcattcgtaattgatatcactttcatagagtccaatg |
476 |
Q |
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| T |
45374288 |
ttattacaatattagttgccgagtggcatcatttgtaattgatatcactttcatagagtcgaatg |
45374352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 10 - 476
Target Start/End: Original strand, 45389068 - 45389510
Alignment:
| Q |
10 |
agatgaaagcgattagtagacgaagtacatagcatgtactaattaacaattattgaaagtatagtaagcattatgcaaagtttgcaaactattctgagga |
109 |
Q |
| |
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||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |
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| T |
45389068 |
agatgaaagcgattaatagacggagtacatagcgtgtactaattaacaattattgaaagtatagtaagcattgagcaaa---------ctattgtgaggc |
45389158 |
T |
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| Q |
110 |
taaaatttaccagttgcaacttgcaagttgcattctcgataagttaacttaaactcaatgatttttgacacaagatttggcaacatattttcataaagtt |
209 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
45389159 |
taaaatttactagttgcaacttgcaagttgcattctcgataagtcaacttaagctcaataatt---gacacaagatttggcaacatattttcataaagtt |
45389255 |
T |
|
| Q |
210 |
tgaaaactatgtgagctgcattagatgtcaaagatgcagtgcagcgatcccaaataactttcaacaacctaaccaacaactgaagaagtaggtttatgaa |
309 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45389256 |
tgaaaactatgttggctgcatttgatgtcaaagatgcagtgcagcgatcccaaataactttcaac------------aactgaagaagtaggtttatgaa |
45389343 |
T |
|
| Q |
310 |
acttggaattggcctttgtgaagatttgtatgccagaagaaagataatcagtaaaatcatgaaataacacaaatgatataaggaagcctctattaggatt |
409 |
Q |
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||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45389344 |
actcggaatcggcctttgtgaagatttgtatgccagaagaaagataatcagtaaaatcatgaaataacacaaatgatataaggaagccttgattaggatt |
45389443 |
T |
|
| Q |
410 |
tcttattacaatattagttgccgagtggcatcattcgtaattgatatcactttcatagagtccaatg |
476 |
Q |
| |
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|||||||||||||||| |||| |||| |||||| ||||||||||||||||||||||||||||||| |
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|
| T |
45389444 |
tcttattacaatattaattgctacgtggtatcatttgtaattgatatcactttcatagagtccaatg |
45389510 |
T |
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