View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6553_high_10 (Length: 287)
Name: NF6553_high_10
Description: NF6553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6553_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 4543594 - 4543851
Alignment:
| Q |
12 |
atgaactattttgtcctaaagctagatttgtgttcttgattgaatctcttgtcagcttagcaaaatcggttccagaatctcgtataaaggttcttgactt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4543594 |
atgaactattttgtcctaaagctagatttgtgttcttgattgaatctcttgtcagcttagcaaaatcggttccagaatctcgtatataggttcttgactt |
4543693 |
T |
|
| Q |
112 |
tatcctagcaaagtaaaaatatgcttctgctgacattttggatcaatgttaaaccatgagcagagataaaacctgcagaacatatacaaacattaccttt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4543694 |
tatcctagcaaagtaaaaatatgcttctgctgacattttggatcaatgttaaaccatgagcagagataaaacctgcagaacatatacaaacattaccttt |
4543793 |
T |
|
| Q |
212 |
gcataaatataactaaaatgtcgattattaaatccgtaacaagtacaaacaagcaaat |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4543794 |
gcataaatataactaaaatgtcgattattaaatccgtaacaagtacaaacaagcaaat |
4543851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 4881009 - 4881267
Alignment:
| Q |
12 |
atgaactattttgtcctaaagctagatttgtgttcttgattgaatctcttgtcagcttagcaaaatcggttccagaatctcgtataaaggttcttgactt |
111 |
Q |
| |
|
||||||| ||||| |||||||||||| || | |||||||||||||||| |||||| ||| | || | | |||||||| |||| | |||||| || || |
|
|
| T |
4881009 |
atgaactgttttggcctaaagctagagttatcttcttgattgaatctcgcgtcagcatagaagaaacagaaccagaatcccgtactatggttctcgattt |
4881108 |
T |
|
| Q |
112 |
tatcctagcaaagtaa-aaatatgcttctgctgacattttggatcaatgttaaaccatgagcagagataaaacctgcagaacatatacaaacattacctt |
210 |
Q |
| |
|
||||||||||| || |||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| |||| |||||| ||| ||||| |
|
|
| T |
4881109 |
catcctagcaaaatagtaaatgggcttctgctgacattttggatcatttttataccatgagcagagataaaacctgcacaacacatacaagcatcacctt |
4881208 |
T |
|
| Q |
211 |
tgcataaatataactaaaatgtcgattattaaatccgtaacaagtacaaacaagcaaat |
269 |
Q |
| |
|
||| ||| || ||||| |||||| |||| |||||| |||||| ||| ||| ||||||| |
|
|
| T |
4881209 |
tgcgtaactacaactagaatgtcaattagaaaatccataacaactactaaccagcaaat |
4881267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 31241898 - 31241817
Alignment:
| Q |
15 |
aactattttgtcctaaagctagatttgtgttcttgattgaatctcttgtcagcttagcaaaatcggttccagaatctcgtat |
96 |
Q |
| |
|
|||| ||||| ||||||||| || || | |||||||||||||||| |||||| |||||| || ||||||||||||| ||||| |
|
|
| T |
31241898 |
aacttttttggcctaaagctggagttatcttcttgattgaatctcgtgtcagattagcagaaacggttccagaatcccgtat |
31241817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University