View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6553_high_12 (Length: 240)
Name: NF6553_high_12
Description: NF6553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6553_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 42852484 - 42852272
Alignment:
| Q |
18 |
tgcacaaattcaacaatgcctaaatccaaggattacaccatcagctagtgtttcatgtgaaaattaaacgtcaaaatcaatttaaatgtcaatataaagt |
117 |
Q |
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| T |
42852484 |
tgcacaaattcaacaatgcctaaatccaaggattacaccatcagctagtgtttcatgtgaaaattaaacgtcaaaatcaatttaaatgtcaatataaagt |
42852385 |
T |
|
| Q |
118 |
gaacaatttaaattaaggtgctaataaaaagtattaagaagattgcaccaataaaaaacctataatcagaatatatacaaattttctaaaagagggtaaa |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42852384 |
gaacaatttaatttaaggtgctaataaaaagtattaagaagattgcaccaataaaaaacctataatcagaatatatacaaattttctaaaagagggtaaa |
42852285 |
T |
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| Q |
218 |
gggattccctatg |
230 |
Q |
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| T |
42852284 |
gggattccctatg |
42852272 |
T |
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