View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6553_high_8 (Length: 321)
Name: NF6553_high_8
Description: NF6553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6553_high_8 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 14175645 - 14175325
Alignment:
| Q |
1 |
atgagccagcgttttatgccacaaatctggcaaagtaacattctcgaccgcattcaagccatctttgaccagcttgacttgagttttgtaaagcgttgaa |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
14175645 |
atgagccagccttttatgccacaaatctggcaaagcaacattctcgaccgcattcaagccatctttgatcagcttgacttgagttttgtaaagcgtcgaa |
14175546 |
T |
|
| Q |
101 |
tacacggcgcctctagcaatcatcaacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaaatcaagagcatggacag |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175545 |
tacacgacgcctctagcaatcatcaacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaaatcaagagcatggacag |
14175446 |
T |
|
| Q |
201 |
agattagatttagacgcaaatctggcacatgtctcacgtccttcagtgttagtgtaaaaccggtattggtttgaacacacacatcaccaattccaacaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175445 |
agattagatttagacgcaaatctggcacatgtcgcacgtccttcagtgttagtgtaaaaccggtattggtttgaacacacacatcaccaattccaacaat |
14175346 |
T |
|
| Q |
301 |
atctgcaatgctattattgcc |
321 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
14175345 |
atctgcaatgctattattgcc |
14175325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 28610233 - 28610553
Alignment:
| Q |
1 |
atgagccagcgttttatgccacaaatctggcaaagtaacattctcgaccgcattcaagccatctttgaccagcttgacttgagttttgtaaagcgttgaa |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
28610233 |
atgagccagccttttatgccacaaatctggcaaagcaacattctcgaccgcattcaagccatctttgatcagcttgacttgagttttgtaaagcgtcgaa |
28610332 |
T |
|
| Q |
101 |
tacacggcgcctctagcaatcatcaacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaaatcaagagcatggacag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28610333 |
tacacggcgcctctagcaatcatcaacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaaatcaagagcatggacag |
28610432 |
T |
|
| Q |
201 |
agattagatttagacgcaaatctggcacatgtctcacgtccttcagtgttagtgtaaaaccggtattggtttgaacacacacatcaccaattccaacaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28610433 |
agattagatttagacgcaaatctggcacatgtcgcacgtccttcagtgttagtgtaaaatcggtattggtttgaacacacacatcaccaattccaacaat |
28610532 |
T |
|
| Q |
301 |
atctgcaatgctattattgcc |
321 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
28610533 |
atctgcaatgctattattgcc |
28610553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 12932375 - 12932055
Alignment:
| Q |
1 |
atgagccagcgttttatgccacaaatctggcaaagtaacattctcgaccgcattcaagccatctttgaccagcttgacttgagttttgtaaagcgttgaa |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
12932375 |
atgagccagccttttatgccacaaatctgccaaagcaacattctcggccgcattcaagccatctttgatcagcttgacttgagttttgtaaagcgtcgaa |
12932276 |
T |
|
| Q |
101 |
tacacggcgcctctagcaatcatcaacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaaatcaagagcatggacag |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12932275 |
tacacgacgcctctagcaatcatcaacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaaatcaagagcatggacag |
12932176 |
T |
|
| Q |
201 |
agattagatttagacgcaaatctggcacatgtctcacgtccttcagtgttagtgtaaaaccggtattggtttgaacacacacatcaccaattccaacaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12932175 |
agattagatttagacgcaaatctggcacatgtcgcacgttcttcagtgttagtgtaaaaccggtattggtttgaacacacacatcaccaattccaacaat |
12932076 |
T |
|
| Q |
301 |
atctgcaatgctattattgcc |
321 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
12932075 |
atctgcaatgctattattgcc |
12932055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 2 - 309
Target Start/End: Original strand, 24874113 - 24874418
Alignment:
| Q |
2 |
tgagccagcgttttatgccacaaatctggcaaagtaacattctcgaccgcattcaagccatctttgaccagcttgacttgagttttgtaaagcgttgaat |
101 |
Q |
| |
|
||||||| | |||||||||||||||||| ||||| |||||||| |||| ||||| ||| |||||||| || ||| |||||| ||||||||||| | | || |
|
|
| T |
24874113 |
tgagccatccttttatgccacaaatctgacaaagcaacattcttgaccacattcgagcaatctttgatcaacttaacttgatttttgtaaagcctcggat |
24874212 |
T |
|
| Q |
102 |
acacggcgcctctagcaatcatcaacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaaatcaagagcatggacaga |
201 |
Q |
| |
|
|||| || |||||| || |||||| | |||||||||| || || | ||||||||||||||||||||||||| ||| |||||| ||||||||||||| || |
|
|
| T |
24874213 |
acacatcgtctctagtaaccatcaatgctcctttggtaggtatc-actttccatcaccaaagttgttttgaagtccagctaaa-caagagcatggacgga |
24874310 |
T |
|
| Q |
202 |
gattagatttagacgcaaatctggcacatgtctcacgtccttcagtgttagtgtaaaaccggtattggtttgaacacacacatcaccaattccaacaata |
301 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| ||||||||| |||||| |||| |||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24874311 |
gattatatttagacgcaaatctagcacatgtcgcacgtcctttagtgttggtgttaaaccgatattggtttgaacacacacatcattaattccaacaata |
24874410 |
T |
|
| Q |
302 |
tctgcaat |
309 |
Q |
| |
|
||| |||| |
|
|
| T |
24874411 |
tctacaat |
24874418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 15290789 - 15290614
Alignment:
| Q |
12 |
ttttatgccacaaatctggcaaagtaacattctcgaccgcattcaagccatctttgaccagcttgacttgagttttgtaaagcgttgaatacacggcgcc |
111 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| |||| |||||| ||||||| || ||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
15290789 |
ttttatgccacaaatttggcaaagcaacattctcgactgcat-caagccctctttgatcaacttgacttgagttttgtaaagtgtcgaatacacggcgcc |
15290691 |
T |
|
| Q |
112 |
tctagcaatcatcaacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaaatcaa |
188 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15290690 |
tctagtaaccatcaacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaaatcaa |
15290614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 38995885 - 38996083
Alignment:
| Q |
1 |
atgagccagcgttttatgccacaaatctggcaaagtaacattctcgaccgcattcaagccatctttgaccagcttgacttgagttttgtaaagcgttgaa |
100 |
Q |
| |
|
|||||||||| ||||||||| |||| ||| |||| | |||||||||||||||||||||| ||||||| |||||||||||||||||| || | ||| ||| |
|
|
| T |
38995885 |
atgagccagccttttatgccgaaaatttggaaaagcatcattctcgaccgcattcaagccgtctttgatcagcttgacttgagttttatacaacgtcgaa |
38995984 |
T |
|
| Q |
101 |
tacacggcgcctctagcaatcat---caacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaaatcaagagcatgg |
196 |
Q |
| |
|
|||||| ||||| |||||| ||| || ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
38995985 |
tacacgacgcctttagcaaccatataaaaagatcctttgataagtttccattttccatcaccaaaattgttttgaaatttagctaaatcaagagcatgg |
38996083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 318
Target Start/End: Original strand, 38996099 - 38996153
Alignment:
| Q |
264 |
tattggtttgaacacacacatcaccaattccaacaatatctgcaatgctattatt |
318 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| || ||||||| |||| |
|
|
| T |
38996099 |
tattggtttaaacacacacatcaccaattccaacaatatttgtaatgctactatt |
38996153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University