View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6553_low_10 (Length: 342)
Name: NF6553_low_10
Description: NF6553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6553_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 1047427 - 1047720
Alignment:
| Q |
18 |
accattggtgaacaaggctctttaatacataatttggtattaaagcattgtggattagtctttgttcactttcaagacaagtgtgttgaccagagtctat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1047427 |
accattggtgaacaaggctctttaatacataatttggtattaaagcattgtggattagtctttgttcactttcaagacaagtgtgttgaccagagtctat |
1047526 |
T |
|
| Q |
118 |
ccactctggaattgaaattctatcataagtgtgccctgatgatagaatcacaggatccctcattagtctagcgaaatctaattggtagataaggt--aat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1047527 |
acactctggaattgaaattctatcataagtgtgccctgatgatagaatcacaggatccctcattagtctagcgaaatctaattggtagataaggtaaaat |
1047626 |
T |
|
| Q |
216 |
gactcacgatc-----acacaacacaacaatcatcatatccacggccactcacaatctcaagctgtgttggaaggaagccttcaattgaatttg |
304 |
Q |
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| T |
1047627 |
gactaacgatcacacaacacaacacaacaatcatcatatccacggccactcacaatctcaagctgtgttggaaggaagccttcaattgaatttg |
1047720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 66 - 252
Target Start/End: Complemental strand, 1023189 - 1023006
Alignment:
| Q |
66 |
tgtggattagtctttgttcactttcaagacaagtgtgttgaccagagtctatccactctggaattgaaattctatcataagtgtgccctgatgatagaat |
165 |
Q |
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|||| ||||||||||||| ||||||| |||||||||| | |||||||||||| ||||||| |||||||||||| |||||||||||||||||||| ||| |
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| T |
1023189 |
tgtgaattagtctttgtttactttcaggacaagtgtggtcaccagagtctatacactctgcaattgaaattct---ataagtgtgccctgatgatacaat |
1023093 |
T |
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| Q |
166 |
cacaggatccctcat---tagtctagcgaaatctaattggtagataaggtaatgactcacgatcacacaacacaacaatcatcatatcca |
252 |
Q |
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| T |
1023092 |
ca-gggttcccccatataaagtctagtgcaacccaagtggta-ataaggtaattactcatgatcacac-acacaacaatcatcatatcca |
1023006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 209
Target Start/End: Complemental strand, 1020843 - 1020735
Alignment:
| Q |
108 |
cagagtctatccactctggaattgaaattctatcataagtgtgccctgatgatagaatca-------caggatccctcattagtctagcgaaatctaatt |
200 |
Q |
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|||||||| ||||||||| | |||||||||||||||||||||| | |||| ||| ||||| || ||||||||||||||||||| |||| || | |
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| T |
1020843 |
cagagtctgtccactctgcagttgaaattctatcataagtgtgtcttgattatacaatcataggaatcaagatccctcattagtctagcaaaattcaagt |
1020744 |
T |
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| Q |
201 |
ggtagataa |
209 |
Q |
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||||||||| |
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| T |
1020743 |
ggtagataa |
1020735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 35820853 - 35820675
Alignment:
| Q |
18 |
accattggtgaacaaggctctttaatacataatttggtattaaagcattgtggattagtctttgttcactttcaagacaagtgtgttgaccagagtctat |
117 |
Q |
| |
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||||||| |||||||||||||| || |||| |||||||||| |||| |||| |||||||||||| |||||| | |||||||||| |||||||||| || |
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| T |
35820853 |
accattgatgaacaaggctcttcaacgcatagtttggtattagagcagtgtgaattagtctttgtccacttttaggacaagtgtggtgaccagagttaat |
35820754 |
T |
|
| Q |
118 |
ccactctggaattgaaattctatcataagtgtgccctgatgatagaatcacaggatccctcatta-gtctagcgaaatc |
195 |
Q |
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||| |||| |||||||||||||||||||||||| |||||||| | |||||||||||| ||||||| ||||||||||||| |
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| T |
35820753 |
ccattctgcaattgaaattctatcataagtgtgtcctgatgaaacaatcacaggatctctcattaggtctagcgaaatc |
35820675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 165 - 295
Target Start/End: Original strand, 40636411 - 40636541
Alignment:
| Q |
165 |
tcacaggatccctcatta-gtctagcgaaatctaattggtagataaggtaatgactcacgatcacacaacacaacaatcatcatatccacggccactcac |
263 |
Q |
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|||||||||||||| | | || ||||| |||| || |||||||||||||||| |||||| |||||||| |||||||||||||||||||||||| |||| | |
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| T |
40636411 |
tcacaggatccctcgtaaagtttagcgcaatccaagtggtagataaggtaattactcacaatcacaca-cacaacaatcatcatatccacggctactcgc |
40636509 |
T |
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| Q |
264 |
aatctcaagctgtgttggaaggaagccttcaa |
295 |
Q |
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||||||||||||||||||||| || ||||||| |
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| T |
40636510 |
aatctcaagctgtgttggaagaaaaccttcaa |
40636541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 40642700 - 40642784
Alignment:
| Q |
18 |
accattggtgaacaaggctctttaatacataatttggtattaaagcattgtggattagtctttgttcactttcaagacaagtgtg |
102 |
Q |
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||||||||||||||||||||||||||| ||||||| |||| ||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
40642700 |
accattggtgaacaaggctctttaatatataatttagtatgaaagcattgtgaattagtctttgttcactttcaggacaagtgtg |
40642784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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