View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6553_low_12 (Length: 332)
Name: NF6553_low_12
Description: NF6553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6553_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 314
Target Start/End: Original strand, 26976730 - 26977031
Alignment:
| Q |
13 |
atgaagcagaagaataataaggtgaagaaggtgaattagagggtgatgaagatgatgaagacataatatttttcttaagatttagttttgggaaaagtgc |
112 |
Q |
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| T |
26976730 |
atgaagcagaagaataataaggtgaagaaggtgaattagagggtgatgaagatgatgaagacataatatttttcttaagatttagttttgggaaaagtgc |
26976829 |
T |
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| Q |
113 |
aagaaaaatattggatcttgagtttttcttaattggtgnnnnnnngcatgaataataagaaggtggaggagtaagaggaggaagatttttctcagagaaa |
212 |
Q |
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| T |
26976830 |
aagaaaaatattggatcttgagtttttcttaattggtgtttttttgcatgaataataagaaggtggaggagtaagaggaggaagatttttctcagagaaa |
26976929 |
T |
|
| Q |
213 |
gtatattttggtgtgccaggttgagattcccaaacaaaaggtacagtaacagctactctaaaagaaggattggatatggaactttcttttgtaagaagtc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26976930 |
gtatattttggtgtgccaggttgagattcccaaacaaaagggacagtaacagctactctaaaagaaggattggatatggaactttcttttgtaagaagtc |
26977029 |
T |
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| Q |
313 |
tg |
314 |
Q |
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|| |
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| T |
26977030 |
tg |
26977031 |
T |
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