View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6553_low_16 (Length: 296)
Name: NF6553_low_16
Description: NF6553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6553_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 14578020 - 14577754
Alignment:
| Q |
1 |
atgcaaaagagagttttatgctacattcgcataatattcattataatggttcatgattaattcgctatataaactttcgctacaagtaacattagccaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||| | |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14578020 |
atgcaaaagagagttttatgctacattcacgtaatattcat-ataatggttcttgattaattcgctatataaactttcgctacaagtaacattagccaaa |
14577922 |
T |
|
| Q |
101 |
gagaaaagagcattattatttctagagactgacaattcacgaagtttatcacgaagtgcttcaaccattagattcttatttggtggaaaacacaagcggt |
200 |
Q |
| |
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|||||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14577921 |
gagaaaagagcattattatttcgagagattgacaattcatgaagta------------cttcaaccattagattcttatttggtggaaaacacaagcggt |
14577834 |
T |
|
| Q |
201 |
gggatgcaaaagagagtctttcgctaaaatcacttaatattcatataaaggtttgtgattaattcgctatgtaaactttc |
280 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14577833 |
gggatgcaaaagagagtctttcgctaaaatcacttaatattcatataaaggtttgtgattaattcgctatgtaaactttc |
14577754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 14578221 - 14577944
Alignment:
| Q |
1 |
atgcaaaagagagttttatgctacattcgcataatattcattataatggttcatgattaattcgctatataaactttcgctacaagtaacattagccaaa |
100 |
Q |
| |
|
||||||||||||||||| | |||| || | |||||||||| |||||||||| ||||||||||| ||| ||||||||||||||||||| ||||||||||| |
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| T |
14578221 |
atgcaaaagagagttttccgttacagtcacttaatattcat-ataatggttcgtgattaattcgatatgtaaactttcgctacaagtagcattagccaaa |
14578123 |
T |
|
| Q |
101 |
gagaaaagagcattattatttctagagactgacaattcacgaagtttatcacgaagtgcttcaaccattagattcttatttggtggaaaacacaagcggt |
200 |
Q |
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|||||| ||||||| | |||||| ||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| | | | |
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| T |
14578122 |
gagaaa-gagcattgtcatttctctagactgacaattcacgaagcttattacgaagtgctccaaccattagattcttatttggtggaaaacacaggtgat |
14578024 |
T |
|
| Q |
201 |
gggatgcaaaagagagtctttcgctaaaatcacttaatattcatataaaggtttgtgattaattcgctatgtaaactttc |
280 |
Q |
| |
|
||||||||||||||||| || |||| | |||| |||||||||||||| |||| ||||||||||||||| ||||||||| |
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| T |
14578023 |
gggatgcaaaagagagttttatgctacattcacgtaatattcatataatggttcttgattaattcgctatataaactttc |
14577944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 14578422 - 14578145
Alignment:
| Q |
1 |
atgcaaaagagagttttatgctacattcgcataatattcattataatggttcatgattaattcgctatataaactttcgctacaagtaacattagccaaa |
100 |
Q |
| |
|
||||||||||||||||| ||||| || | |||||||||| |||| |||| ||||||||| | ||| |||||||| |||||||||| ||||||||||| |
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| T |
14578422 |
atgcaaaagagagttttccgctacggtcacttaatattcat-ataaccgttcgtgattaatttggtatgtaaacttttgctacaagtagcattagccaaa |
14578324 |
T |
|
| Q |
101 |
gagaaaagagcattattatttctagagactgacaattcacgaagtttatcacgaagtgcttcaaccattagattcttatttggtggaaaacacaagcggt |
200 |
Q |
| |
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|||||||||||||| ||||||| ||| || ||||||||| ||| |||||| |||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
14578323 |
gagaaaagagcattgctatttctcgaggctaacaattcacaaagcttatcatgaagtgctccaaccattagattcttatttggtggaaaacacaactggt |
14578224 |
T |
|
| Q |
201 |
gggatgcaaaagagagtctttcgctaaaatcacttaatattcatataaaggtttgtgattaattcgctatgtaaactttc |
280 |
Q |
| |
|
|||||||||||||||| || || || | ||||||||||||||||||| |||| |||||||||||| ||||||||||||| |
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| T |
14578223 |
-ggatgcaaaagagagttttccgttacagtcacttaatattcatataatggttcgtgattaattcgatatgtaaactttc |
14578145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 48 - 280
Target Start/End: Complemental strand, 14577584 - 14577353
Alignment:
| Q |
48 |
ggttcatgattaattcgctatataaactttcgctacaagtaacattagccaaagagaaaagagcattattatttctagagactgacaattcacgaagttt |
147 |
Q |
| |
|
||||| ||||||||| ||||| |||| ||||||| |||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||||||| || |
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| T |
14577584 |
ggttcgtgattaatttgctatgtaaaatttcgcttttagtagcattagccaaagagaaaagagcattgctatttcttgagattgacaattcacgaagctt |
14577485 |
T |
|
| Q |
148 |
atcacgaagtgcttcaaccattagattcttatttggtggaaaacacaagcggtgggatgcaaaagagagtctttcgctaaaatcacttaatattcatata |
247 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| |
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| T |
14577484 |
atcacgaagtgctccaaccattaaattcttatttggt-ataaacacaagcggtgggatgcaaaagagagttttccgctacggtcacttaatattcatata |
14577386 |
T |
|
| Q |
248 |
aaggtttgtgattaattcgctatgtaaactttc |
280 |
Q |
| |
|
| |||| |||||||||||||||||||||||||| |
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| T |
14577385 |
acggttcgtgattaattcgctatgtaaactttc |
14577353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 14577830 - 14577554
Alignment:
| Q |
1 |
atgcaaaagagagttttatgctacattcgcataatattcattataatggttcatgattaattcgctatataaactttcgctacaagtaacattagccaaa |
100 |
Q |
| |
|
|||||||||||||| || |||| | || | |||||||||| |||| |||| ||||||||||||||| |||||||||||||||| || ||||||||||| |
|
|
| T |
14577830 |
atgcaaaagagagtctttcgctaaaatcacttaatattcat-ataaaggtttgtgattaattcgctatgtaaactttcgctacaactagcattagccaaa |
14577732 |
T |
|
| Q |
101 |
gagaaaagagcattattatttctagagactgacaattcacgaagtttatcacgaagtgcttcaaccattagattcttatttggtggaaaacacaagcggt |
200 |
Q |
| |
|
|| |||| |||||| ||||| ||| ||||||||||||||| ||||||||||||||| |||| |||||||||||||||| |||||||||||||| || |
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| T |
14577731 |
gaaaaaatagcattgccgtttctcgagtgtgacaattcacgaagcttatcacgaagtgctccaactattagattcttatttgatggaaaacacaagcagt |
14577632 |
T |
|
| Q |
201 |
gggatgcaaaagagagtctttcgctaaaatcacttaatattcatataaaggtttgtgattaattcgctatgtaaactttc |
280 |
Q |
| |
|
||||||||||||||||| ||||||| | ||||||||||||||||| | |||| |||||||||| |||||||||| |||| |
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|
| T |
14577631 |
gggatgcaaaagagagtttttcgct--agtcacttaatattcatatcacggttcgtgattaatttgctatgtaaaatttc |
14577554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 125 - 279
Target Start/End: Complemental strand, 14578501 - 14578347
Alignment:
| Q |
125 |
gagactgacaattcacgaagtttatcacgaagtgcttcaaccattagattcttatttggtggaaaacacaagcggtgggatgcaaaagagagtctttcgc |
224 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| || ||| |
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|
| T |
14578501 |
gagactgacaatttacgaagcttatcgcgaagtgcagcaaccattagattcttatttggtggaaaacataagtggtgggatgcaaaagagagttttccgc |
14578402 |
T |
|
| Q |
225 |
taaaatcacttaatattcatataaaggtttgtgattaattcgctatgtaaacttt |
279 |
Q |
| |
|
|| ||||||||||||||||||| ||| |||||||||| | |||||||||||| |
|
|
| T |
14578401 |
tacggtcacttaatattcatataaccgttcgtgattaatttggtatgtaaacttt |
14578347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 14577429 - 14577282
Alignment:
| Q |
1 |
atgcaaaagagagttttatgctacattcgcataatattcattataatggttcatgattaattcgctatataaactttcgctacaagtaacattagccaaa |
100 |
Q |
| |
|
||||||||||||||||| ||||| || | |||||||||| |||| ||||| ||||||||||||||| ||||||||||||||||| ||||||| ||||| |
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|
| T |
14577429 |
atgcaaaagagagttttccgctacggtcacttaatattcat-ataacggttcgtgattaattcgctatgtaaactttcgctacaagcaacattatccaaa |
14577331 |
T |
|
| Q |
101 |
gagaaaagagcattattatttctagagactgacaattcacgaagtttat |
149 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||| |||| |
|
|
| T |
14577330 |
gagaaaagagcattgctatttcttgagactgacaattcacgaagcttat |
14577282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 279
Target Start/End: Complemental strand, 8907327 - 8907197
Alignment:
| Q |
149 |
tcacgaagtgcttcaaccattagattcttatttggtggaaaacacaagcggtgggatgcaaaagagagtctttcgctaaaatcacttaatattcatataa |
248 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||||||||||||||||||||| || ||||||||| ||||| ||| |||| | ||| ||||||||||||||| |
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|
| T |
8907327 |
tcacgaagtgctcaaacaattagatttttatttggtggaaaacacaagcgatgagatgcaaaacagagttttttgctatagtcatttaatattcatataa |
8907228 |
T |
|
| Q |
249 |
aggtttgtgattaattcgctatgtaaacttt |
279 |
Q |
| |
|
|||| |||||||||| |||||||||||| |
|
|
| T |
8907227 |
caatttgcgattaattcgttatgtaaacttt |
8907197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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