View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6553_low_17 (Length: 293)
Name: NF6553_low_17
Description: NF6553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6553_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 44730522 - 44730244
Alignment:
| Q |
16 |
atgaaggatactgatccaattataaagtcaaaaattggttaagtagtgtacttgtcgtagttgtaactcatgtcatagccaacaaccgagccaaatcaaa |
115 |
Q |
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| T |
44730522 |
atgaaggatactgatccaattataaagtcaaaaattggttaagtagtgtacttgttgtagttgtaactcatgtcatagccaacaaccgagccaaatcaaa |
44730423 |
T |
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| Q |
116 |
actaccaagtccaccattatattcttcacaagatggagcggtttaacaaacatcacttctcattgcatacattaccttgtttt----------------a |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44730422 |
actaccaagtccaccattatattcttcacaagatggagcggtttaacaaacatcacttctcattgcatacattaccttgttttacacaccttttgtctca |
44730323 |
T |
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| Q |
200 |
catcaacaccttgtattgactcataacaatatcctcttatgggaaaccatatctcatttcatgccacaaccaaaatcat |
278 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44730322 |
catcaacaccttgtattggctcataacaatatcctcttatgggaaaccatatctcatttcatgccacaaccaaaatcat |
44730244 |
T |
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