View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6553_low_2 (Length: 709)

Name: NF6553_low_2
Description: NF6553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6553_low_2
NF6553_low_2
[»] chr6 (7 HSPs)
chr6 (77-693)||(24992136-24992783)
chr6 (404-518)||(26182684-26182798)
chr6 (274-393)||(23260663-23260784)
chr6 (274-393)||(34636231-34636352)
chr6 (274-393)||(25005188-25005309)
chr6 (335-392)||(13777247-13777304)
chr6 (274-391)||(32450348-32450467)
[»] chr8 (4 HSPs)
chr8 (274-371)||(35839167-35839266)
chr8 (332-376)||(40841550-40841594)
chr8 (333-371)||(22816485-22816523)
chr8 (274-339)||(22816401-22816466)
[»] chr2 (7 HSPs)
chr2 (274-376)||(1193659-1193763)
chr2 (435-524)||(14490370-14490459)
chr2 (285-376)||(29270696-29270787)
chr2 (335-392)||(28267692-28267749)
chr2 (317-376)||(44788576-44788635)
chr2 (335-392)||(12774954-12775011)
chr2 (335-393)||(32735438-32735498)
[»] chr5 (7 HSPs)
chr5 (274-371)||(27026687-27026786)
chr5 (285-393)||(536774-536884)
chr5 (317-376)||(6308684-6308743)
chr5 (274-325)||(6308759-6308810)
chr5 (338-381)||(40687600-40687643)
chr5 (287-392)||(4558070-4558178)
chr5 (274-326)||(536927-536979)
[»] chr4 (8 HSPs)
chr4 (285-392)||(28969279-28969386)
chr4 (319-392)||(41868614-41868687)
chr4 (317-376)||(69311-69370)
chr4 (274-339)||(69373-69438)
chr4 (206-307)||(41868764-41868866)
chr4 (338-391)||(55162182-55162235)
chr4 (338-391)||(40458951-40459004)
chr4 (275-392)||(49499057-49499176)
[»] chr3 (8 HSPs)
chr3 (274-376)||(17542752-17542854)
chr3 (274-393)||(5004805-5004926)
chr3 (274-376)||(9104235-9104337)
chr3 (274-393)||(46404647-46404768)
chr3 (274-393)||(16975298-16975419)
chr3 (274-393)||(8730845-8730964)
chr3 (274-393)||(9082732-9082851)
chr3 (336-393)||(16475322-16475381)
[»] scaffold0413 (1 HSPs)
scaffold0413 (274-393)||(8884-9005)
[»] chr1 (7 HSPs)
chr1 (274-392)||(9537441-9537559)
chr1 (335-386)||(18474080-18474131)
chr1 (317-376)||(21264718-21264779)
chr1 (301-393)||(35762164-35762258)
chr1 (338-391)||(8421619-8421672)
chr1 (335-393)||(37667296-37667356)
chr1 (333-376)||(6836013-6836058)
[»] chr7 (9 HSPs)
chr7 (274-371)||(9993357-9993454)
chr7 (274-393)||(15874022-15874143)
chr7 (335-392)||(48654376-48654433)
chr7 (274-392)||(22077678-22077796)
chr7 (274-392)||(21491581-21491703)
chr7 (274-350)||(11036406-11036485)
chr7 (338-391)||(49170428-49170481)
chr7 (274-393)||(12196655-12196772)
chr7 (483-512)||(43656279-43656308)
[»] scaffold1838 (1 HSPs)
scaffold1838 (274-392)||(221-339)
[»] scaffold0022 (1 HSPs)
scaffold0022 (429-481)||(1963-2015)
[»] scaffold0013 (3 HSPs)
scaffold0013 (433-479)||(243286-243332)
scaffold0013 (333-371)||(243168-243208)
scaffold0013 (274-310)||(243119-243155)


Alignment Details
Target: chr6 (Bit Score: 466; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 77 - 693
Target Start/End: Complemental strand, 24992783 - 24992136
Alignment:
Q  77 ttagcaactatatcccagaggccatacatattcatatccttttcttaataatttatttaagaataattttgagtactgtaacattattttctttctctaa 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24992783 ttagcaactatatcccagaggccatacatattcatatccttttcttaataatttatttaagaataattttgactactgtaacattattttctttctctaa 24992684  T
Q  177 tttatcaaaaatctaacattt--------aacatcacaaacatataaagcataatgaaataaaatgagatatattatttcacatcaaatcctcataaaca 268  Q
    |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24992683 tttatcaaaaatctaacatttctttatctaacatcacaaacatataaagcataatgaaataaaatgagatatattatttcagatcaaatcctcataaaca 24992584  T
Q  269 cataccatataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaaga 368  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||    
T  24992583 cataccatataaaacttaattaaaataatcagttttataaaagaataaattttaccacgtaaagaaatattttaattgtttttcttttcaaaa-acaaga 24992485  T
Q  369 atttctacttctaattcataacatatctctagta---------------tgggaaaaaacccttaccattgacgattttcttcctagtagaacaactcta 453  Q
    |||||||||| |||||||||||||||| ||||||               ||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  24992484 atttctacttataattcataacatatccctagtacttaatatagacatatgggaaaaagcccttaccattgacgcttttcttcctagtagaacaactcta 24992385  T
Q  454 aatcaaggcacgtcgatctttgctccgttaaatctatacttgatttttcgttgaacaaaacaaggcaaggtgataggatgcttaacataatatgatgaga 553  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24992384 aatcaaggcacgtcgatctttgctccgttaagtttatacttgatttttcgttgaacaaaacaaggcaaggtgataagatgcttaacataatatgatgaga 24992285  T
Q  554 acgtaaaagaagctgccgtgattcccaaaatttgagcatgaaaggaaaatggtaaacggttaattatgtaatatgggattggggtgataa---------t 644  Q
    ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |    
T  24992284 acgcaaaagaagctgccgtgattcccaaaattggagcatgaaaggaaaatggtaaacggttaattatgtaatatgggattggggtgataattgtgtaact 24992185  T
Q  645 tgagaaggtttttctacgtgaaagttaaatggatgccaagagttagaga 693  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||    
T  24992184 tgagaaagtttttctacgtgaaagttaaacggatgccaagagttagaga 24992136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 404 - 518
Target Start/End: Original strand, 26182684 - 26182798
Alignment:
Q  404 gggaaaaaacccttaccattgacgattttcttcctagtagaacaactctaaatcaaggcacgtcgatctttgctccgttaaatctatacttgatttttcg 503  Q
    |||||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||| || |||||||||||| ||| |||| |||||  ||||||    
T  26182684 gggaaaaagcccttaccattgacgattttcttcctagtcgagcaactctatatcaaggcacatcaatctttgctccgctaagtctaaacttggcttttcg 26182783  T
Q  504 ttgaacaaaacaagg 518  Q
    ||| ||||| |||||    
T  26182784 ttggacaaagcaagg 26182798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 274 - 393
Target Start/End: Original strand, 23260663 - 23260784
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatt 371  Q
    |||||||||  |||||||| |||| |||||||||||||  ||||||||||||| | |    |||||||| |||||||  ||||||||| ||||||||||     
T  23260663 catataaaatataattaaactaataacttttataaaaggctaaattttaccatatgaattcatattttagttgttttgttcttttcaagagacaagaatc 23260762  T
Q  372 tctacttctaattcataacata 393  Q
    ||||| ||||||||||||||||    
T  23260763 tctacctctaattcataacata 23260784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 274 - 393
Target Start/End: Complemental strand, 34636352 - 34636231
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatt 371  Q
    |||||||||  |||||||| |||| |||||||||||||  ||||||||||||| | |    |||||||| |||||||  ||||||||| ||||||||||     
T  34636352 catataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatc 34636253  T
Q  372 tctacttctaattcataacata 393  Q
    ||||| ||||||||||||||||    
T  34636252 tctacctctaattcataacata 34636231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 274 - 393
Target Start/End: Complemental strand, 25005309 - 25005188
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatt 371  Q
    |||||||||  |||||||| |||| |||||||||||||  ||||||||||||| | |     ||||||| |||||||  ||||||||| ||||||||||     
T  25005309 catataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcttattttagttgttttgttcttttcaacagacaagaatc 25005210  T
Q  372 tctacttctaattcataacata 393  Q
    ||||| ||||||||||||||||    
T  25005209 tctacctctaattcataacata 25005188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 13777247 - 13777304
Alignment:
Q  335 atattttaattgtttttcttttcaaaagacaagaatttctacttctaattcataacat 392  Q
    |||||||| |||||||||||| ||||||| |||||||| ||||||||||||| |||||    
T  13777247 atattttagttgtttttctttccaaaagataagaatttgtacttctaattcacaacat 13777304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 391
Target Start/End: Original strand, 32450348 - 32450467
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatt 371  Q
    |||||||||  |||||||| |||| ||||||||||||   |||| |||||||| | |    |||||||| |||||||  ||||||||| ||||||||||     
T  32450348 catataaaatataattaaactaataacttttataaaaagttaaaatttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatc 32450447  T
Q  372 tctacttctaattcataaca 391  Q
    ||||| ||||||||||||||    
T  32450448 tctacctctaattcataaca 32450467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 8e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 274 - 371
Target Start/End: Complemental strand, 35839266 - 35839167
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgttt--ttcttttcaaaagacaagaatt 371  Q
    ||||||||||| |||||||||||||||| |||||||| | || ||||||||||||||  |||||||||||||||||  ||||||||||||||||||||||    
T  35839266 catataaaactcaattaaaataatcactcttataaaatattagattttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaatt 35839167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 332 - 376
Target Start/End: Original strand, 40841550 - 40841594
Alignment:
Q  332 gaaatattttaattgtttttcttttcaaaagacaagaatttctac 376  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||    
T  40841550 gaaatatttttattgtttttcttttcaaaagacaagaattgctac 40841594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 333 - 371
Target Start/End: Original strand, 22816485 - 22816523
Alignment:
Q  333 aaatattttaattgtttttcttttcaaaagacaagaatt 371  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  22816485 aaatattttaattgtttttcttttcaagagacaagaatt 22816523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 22816401 - 22816466
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatatt 339  Q
    |||||||||||  ||||||||||||||| |||||||| | || ||||||||| ||||  |||||||    
T  22816401 catataaaactcgattaaaataatcactcttataaaatattagattttaccacgtaagaaaatatt 22816466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 274 - 376
Target Start/End: Complemental strand, 1193763 - 1193659
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgttt--ttcttttcaaaagacaagaatt 371  Q
    ||||||||||| |||||||||||||||| |||||||| | || | ||||||||||||  |||||||||||||||||  ||||||||||||||||||||||    
T  1193763 catataaaactcaattaaaataatcactcttataaaatattagactttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaatt 1193664  T
Q  372 tctac 376  Q
     ||||    
T  1193663 gctac 1193659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 435 - 524
Target Start/End: Complemental strand, 14490459 - 14490370
Alignment:
Q  435 tcctagtagaacaactctaaatcaaggcacgtcgatctttgctccgttaaatctatacttgatttttcgttgaacaaaacaaggcaaggt 524  Q
    |||||||||||||||||||| |||| ||||  |||||||||||||||||| ||||||||||||||||||||||| |||  ||||||||||    
T  14490459 tcctagtagaacaactctaattcaaagcacaccgatctttgctccgttaattctatacttgatttttcgttgaagaaagtaaggcaaggt 14490370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 285 - 376
Target Start/End: Complemental strand, 29270787 - 29270696
Alignment:
Q  285 taattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttctac 376  Q
    ||||||||||||| | |||||||||| | |||||||||| ||||||  | ||||||||||||||||||||||||||||||||||||| ||||    
T  29270787 taattaaaataataatttttataaaatattaaattttactatgtaactacatattttaattgtttttcttttcaaaagacaagaattgctac 29270696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 28267692 - 28267749
Alignment:
Q  335 atattttaattgtttttcttttcaaaagacaagaatttctacttctaattcataacat 392  Q
    |||||||| |||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  28267692 atattttagttgtttttcttttcaaaagataagaatttgtacttctaattcacaacat 28267749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 44788635 - 44788576
Alignment:
Q  317 attttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttctac 376  Q
    ||||||||| ||||  |||||||||||||||||||||||||||||||||| |||| ||||    
T  44788635 attttaccacgtaagaaaatattttaattgtttttcttttcaaaagacaataattactac 44788576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 12774954 - 12775011
Alignment:
Q  335 atattttaattgtttttcttttcaaaagacaagaatttctacttctaattcataacat 392  Q
    |||||||| |||||||||||| ||||||| |||||||| ||||||||||||| |||||    
T  12774954 atattttagttgtttttctttccaaaagataagaatttgtacttctaattcacaacat 12775011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 393
Target Start/End: Original strand, 32735438 - 32735498
Alignment:
Q  335 atattttaattgtttt--tcttttcaaaagacaagaatttctacttctaattcataacata 393  Q
    |||||||| |||||||  ||||||||| |||||||||| ||||| ||||||||||||||||    
T  32735438 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacata 32735498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 8e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 274 - 371
Target Start/End: Complemental strand, 27026786 - 27026687
Alignment:
Q  274 catataaaacttaattaaaataatcact-tttataaaagaataa-attttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatt 371  Q
    ||||||||| | |||||||||||||||| ||||||||| ||| | ||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||    
T  27026786 catataaaaatcaattaaaataatcactctttataaaaaaattagattttaccacgtaaagaaatatattaattgtttttcttttcaaaagacaagaatt 27026687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 285 - 393
Target Start/End: Complemental strand, 536884 - 536774
Alignment:
Q  285 taattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatttctacttctaa 382  Q
    |||||||| |||| |||||||||||||  ||||||||||||| | |    |||||||| |||||||  ||||||||| |||||||||| ||||| |||||    
T  536884 taattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaa 536785  T
Q  383 ttcataacata 393  Q
    |||||||||||    
T  536784 ttcataacata 536774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 6308743 - 6308684
Alignment:
Q  317 attttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttctac 376  Q
    ||||||||| ||||  ||||||||||||| ||||||||||||| ||||||||||| ||||    
T  6308743 attttaccacgtaagaaaatattttaattatttttcttttcaagagacaagaattgctac 6308684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 6308810 - 6308759
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttacca 325  Q
    ||||||||||| ||||||||||||||||||||||||| | || |||||||||    
T  6308810 catataaaactcaattaaaataatcacttttataaaatattagattttacca 6308759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 338 - 381
Target Start/End: Complemental strand, 40687643 - 40687600
Alignment:
Q  338 ttttaattgtttttcttttcaaaagacaagaatttctacttcta 381  Q
    |||||||| |||||||||| |||||||||||||| |||||||||    
T  40687643 ttttaattatttttctttttaaaagacaagaattgctacttcta 40687600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 287 - 392
Target Start/End: Original strand, 4558070 - 4558178
Alignment:
Q  287 attaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt---tcttttcaaaagacaagaatttctacttctaat 383  Q
    |||||| |||| |||||||||||||  ||||||||||||| |||    |||||||| || ||||   |||| |||| |||||||||| ||||| |||||     
T  4558070 attaaactaataacttttataaaaggttaaattttaccatataaattcatattttagtttttttctctcttctcaacagacaagaatctctacctctaaa 4558169  T
Q  384 tcataacat 392  Q
    |||||||||    
T  4558170 tcataacat 4558178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 536979 - 536927
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccat 326  Q
    |||||||||  |||||||| |||| |||||||||||||  |||||||||||||    
T  536979 catataaaatataattaaactaataacttttataaaaggttaaattttaccat 536927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 8e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 285 - 392
Target Start/End: Original strand, 28969279 - 28969386
Alignment:
Q  285 taattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttctacttctaatt 384  Q
    |||||||| |||| ||||||||||||   ||||||||||||| |||   ||||||||| ||||||||||| |||| |||||||||||||||| |||||||    
T  28969279 taattaaactaataacttttataaaatgttaaattttaccatataaattaatattttagttgtttttcttctcaacagacaagaatttctacctctaatt 28969378  T
Q  385 cataacat 392  Q
    ||||||||    
T  28969379 cataacat 28969386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 319 - 392
Target Start/End: Complemental strand, 41868687 - 41868614
Alignment:
Q  319 tttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttctacttctaattcataacat 392  Q
    ||||||||||||  | |||||| |||||||| ||||||||| |||||||||||||||||||||||||| |||||    
T  41868687 tttaccatgtaaatatatatttgaattgtttatcttttcaagagacaagaatttctacttctaattcacaacat 41868614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 69370 - 69311
Alignment:
Q  317 attttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttctac 376  Q
    ||||||||| ||||  ||||||||||||||||||||||||||| ||||||||||| ||||    
T  69370 attttaccacgtaagaaaatattttaattgtttttcttttcaagagacaagaattgctac 69311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 69438 - 69373
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatatt 339  Q
    ||||||||||| ||||||||||||||||||||||||| | || ||||||||| ||||  |||||||    
T  69438 catataaaactcaattaaaataatcacttttataaaatattagattttaccacgtaagaaaatatt 69373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 41868866 - 41868764
Alignment:
Q  206 aaacatataaagcataatgaaataaaatgagatatattatttcacatcaaatcctcataaacacataccatataaaacttaattaaa-ataatcactttt 304  Q
    ||||||||||| || ||||||||||||| | |||||| ||| ||||||| || |||||| |||   | |||||||||| ||| |||| ||||||||||||    
T  41868866 aaacatataaatcagaatgaaataaaataaaatatatcattccacatcacattctcatatacaaccatcatataaaacataaataaagataatcactttt 41868767  T
Q  305 ata 307  Q
    |||    
T  41868766 ata 41868764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 55162235 - 55162182
Alignment:
Q  338 ttttaattgtttttcttttcaaaagacaagaatttctacttctaattcataaca 391  Q
    |||||||| |||||||||| |||||||||||||| ||||||||| || ||||||    
T  55162235 ttttaattatttttctttttaaaagacaagaattgctacttctacttaataaca 55162182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 40459004 - 40458951
Alignment:
Q  338 ttttaattgtttttcttttcaaaagacaagaatttctacttctaattcataaca 391  Q
    |||||||| |||||||||| |||||||||||||| |||| |||| || ||||||    
T  40459004 ttttaattatttttctttttaaaagacaagaattgctacctctacttaataaca 40458951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 275 - 392
Target Start/End: Complemental strand, 49499176 - 49499057
Alignment:
Q  275 atataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatatttta--attgtttttcttttcaaaagacaagaattt 372  Q
    ||||||||  |||||||| |||| | |||||||||||  |||||||||| || |||    ||||||||   || |||||||| |||| |||||||||| |    
T  49499176 atataaaatataattaaactaataatttttataaaaggttaaattttactatataaattcatattttagttttttttttcttctcaacagacaagaatct 49499077  T
Q  373 ctacttctaattcataacat 392  Q
    | || |||||||||||||||    
T  49499076 ccacctctaattcataacat 49499057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 274 - 376
Target Start/End: Original strand, 17542752 - 17542854
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttc 373  Q
    ||||||||||| ||||||||||| |||| ||| |||| | || ||||||||| ||||  ||||||||||||||||||||||||||| ||||||||||| |    
T  17542752 catataaaactcaattaaaataaccactcttagaaaatattagattttaccacgtaagaaaatattttaattgtttttcttttcaagagacaagaattgc 17542851  T
Q  374 tac 376  Q
    |||    
T  17542852 tac 17542854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 274 - 393
Target Start/End: Original strand, 5004805 - 5004926
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatt 371  Q
    |||||||||  |||||||| |||| |||||||||||||  ||||||| ||||| |||    |||||||| |||||||  ||||||||||||||||||||     
T  5004805 catataaaatataattaaactaataacttttataaaaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaaaagacaagaatc 5004904  T
Q  372 tctacttctaattcataacata 393  Q
    ||||| ||||||||||||||||    
T  5004905 tctacctctaattcataacata 5004926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 274 - 376
Target Start/End: Complemental strand, 9104337 - 9104235
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttc 373  Q
    ||||||| ||| |||||||||||||| | |||||||| | || |||||||||  | | |||||||||| ||||||||||||||||||||||||||||| |    
T  9104337 catataagactcaattaaaataatcaatcttataaaatattagattttaccacattaagaaatatttttattgtttttcttttcaaaagacaagaattgc 9104238  T
Q  374 tac 376  Q
    |||    
T  9104237 tac 9104235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 274 - 393
Target Start/End: Original strand, 46404647 - 46404768
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatt 371  Q
    |||||||||  |||||||| |||| |||||||||||||  ||||||||||||| | |    |||||||| |||||||  ||||||||| ||||||||||     
T  46404647 catataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatc 46404746  T
Q  372 tctacttctaattcataacata 393  Q
    ||||| ||||||||||||||||    
T  46404747 tctacctctaattcataacata 46404768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 274 - 393
Target Start/End: Complemental strand, 16975419 - 16975298
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatt 371  Q
    |||||||||  |||||||| |||| |||||||||||||  ||||||||||||| | |    |||||||| |||||||  ||||||||| | ||||||||     
T  16975419 catataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacaaacaagaatc 16975320  T
Q  372 tctacttctaattcataacata 393  Q
    ||||| ||||||||||||||||    
T  16975319 tctacctctaattcataacata 16975298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 274 - 393
Target Start/End: Complemental strand, 8730964 - 8730845
Alignment:
Q  274 catataaaacttaattaaaat-aatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaattt 372  Q
    |||||||||| |||| | ||| ||| |||||||||||||| ||||||||||| || ||  | | |||||| || |||||||||| ||||||||||||||     
T  8730964 catataaaacataatgagaattaataacttttataaaagattaaattttaccctgaaaatatacatttta-ttatttttctttttaaaagacaagaatta 8730866  T
Q  373 ctacttctaattcataacata 393  Q
    | ||| ||| || ||||||||    
T  8730865 ccactactatttaataacata 8730845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 274 - 393
Target Start/End: Complemental strand, 9082851 - 9082732
Alignment:
Q  274 catataaaacttaattaaaat-aatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaattt 372  Q
    |||||||||| |||| | ||| ||| |||||||||||||| ||||||||||| || ||  | | |||||| || |||||||||| ||||||||||||||     
T  9082851 catataaaacataatgagaattaataacttttataaaagattaaattttaccctgaaaatatacatttta-ttatttttctttttaaaagacaagaatta 9082753  T
Q  373 ctacttctaattcataacata 393  Q
    | ||| ||| || ||||||||    
T  9082752 ccactactatttaataacata 9082732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 336 - 393
Target Start/End: Complemental strand, 16475381 - 16475322
Alignment:
Q  336 tattttaattgtttt--tcttttcaaaagacaagaatttctacttctaattcataacata 393  Q
    ||||||| |||||||  ||||||||| |||||||||| ||||| ||||||||||||||||    
T  16475381 tattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacata 16475322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 274 - 393
Target Start/End: Complemental strand, 9005 - 8884
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatt 371  Q
    |||||||||  |||||||| |||| ||| |||||||||  ||||||||||||||| |    |||||||| |||||||  ||||||||| |||||||||||    
T  9005 catataaaatataattaaactaataactgttataaaaggttaaattttaccatgtgaattcatattttagttgttttgttcttttcaacagacaagaatt 8906  T
Q  372 tctacttctaattcataacata 393  Q
    | ||| ||||||||||||||||    
T  8905 tatacctctaattcataacata 8884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 274 - 392
Target Start/End: Original strand, 9537441 - 9537559
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttc 373  Q
    |||||||||  |||||||| |||| |||||||||||||  |||||||||| || |||    |||||||| ||||||||||| |||| |||||||||| |     
T  9537441 catataaaatataattaaactaataacttttataaaaggttaaattttacaatataaatttatattttacttgtttttcttctcaacagacaagaatcta 9537540  T
Q  374 tacttctaattcataacat 392  Q
    ||| |||||||||||||||    
T  9537541 tacctctaattcataacat 9537559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 335 - 386
Target Start/End: Original strand, 18474080 - 18474131
Alignment:
Q  335 atattttaattgtttttcttttcaaaagacaagaatttctacttctaattca 386  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  18474080 atattttaattgtttttctttccaaaagacaagaatttgtacttctaattca 18474131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 21264718 - 21264779
Alignment:
Q  317 attttaccatgtaatgaaatattttaattgttt--ttcttttcaaaagacaagaatttctac 376  Q
    ||||||||||||||  |||||||||||||||||  |||||||||||||||||||||| ||||    
T  21264718 attttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaattgctac 21264779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 301 - 393
Target Start/End: Original strand, 35762164 - 35762258
Alignment:
Q  301 ttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatttctacttctaattcataacata 393  Q
    |||||||||||  ||||||||||||| |||    |||||||| |||||||  ||||||||| | |||||||| ||||| ||||||||||||||||    
T  35762164 ttttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacatacaagaatctctacctctaattcataacata 35762258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 8421672 - 8421619
Alignment:
Q  338 ttttaattgtttttcttttcaaaagacaagaatttctacttctaattcataaca 391  Q
    |||||||| |||||||||| |||||||||||||| ||||||||| || ||||||    
T  8421672 ttttaattatttttctttttaaaagacaagaattgctacttctacttaataaca 8421619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 393
Target Start/End: Original strand, 37667296 - 37667356
Alignment:
Q  335 atattttaattgtttt--tcttttcaaaagacaagaatttctacttctaattcataacata 393  Q
    |||||||| |||||||  ||||||||| |||||||||| ||||| ||||||||||||||||    
T  37667296 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacata 37667356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 376
Target Start/End: Complemental strand, 6836058 - 6836013
Alignment:
Q  333 aaatattttaattgtttt--tcttttcaaaagacaagaatttctac 376  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||    
T  6836058 aaatattttaattgttttcttcttttcaaaagacaagaattgctac 6836013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 274 - 371
Target Start/End: Complemental strand, 9993454 - 9993357
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgttt--ttcttttcaaaagacaagaatt 371  Q
    ||||||||||| ||||||||  |||||| |||||||| | || |||||||||| |||  |||||||||||||||||  ||||||||||||||||||||||    
T  9993454 catataaaactcaattaaaa--atcactcttataaaatattagattttaccatataaataaatattttaattgttttcttcttttcaaaagacaagaatt 9993357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 274 - 393
Target Start/End: Original strand, 15874022 - 15874143
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttt--tcttttcaaaagacaagaatt 371  Q
    |||||||||  |||||||| |||| |||||||||||||  ||||||||||||| | |    |||||||| |||||||  ||||||||| | ||||||||     
T  15874022 catataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacatacaagaatc 15874121  T
Q  372 tctacttctaattcataacata 393  Q
    ||||| ||||||||||||||||    
T  15874122 tctacctctaattcataacata 15874143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 48654376 - 48654433
Alignment:
Q  335 atattttaattgtttttcttttcaaaagacaagaatttctacttctaattcataacat 392  Q
    |||||||| |||||||||||| |||||||||||||||| ||||||||||||| |||||    
T  48654376 atattttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacat 48654433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 22077796 - 22077678
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttc 373  Q
    |||||||||  |||||||| |||| ||||||  ||| |  ||||||||||||| |||    |||||||| ||||||||||| | || |||||||||| ||    
T  22077796 catataaaatataattaaactaataactttttgaaatggttaaattttaccatataaatttatattttagttgtttttcttcttaacagacaagaatctc 22077697  T
Q  374 tacttctaattcataacat 392  Q
    ||| |||||||||||||||    
T  22077696 tacctctaattcataacat 22077678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 274 - 392
Target Start/End: Original strand, 21491581 - 21491703
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgttt----ttcttttcaaaagacaagaa 369  Q
    |||||||||  |||||||| |||| |||||||||||||  ||||||||||||| |||    |||||||| || |||    ||||||||||  ||||||||    
T  21491581 catataaaatataattaaactaataacttttataaaaggttaaattttaccatataaattcatattttagtttttttgtcttcttttcaaccgacaagaa 21491680  T
Q  370 tttctacttctaattcataacat 392  Q
    | ||||| |||||||||||||||    
T  21491681 tctctacctctaattcataacat 21491703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 350
Target Start/End: Original strand, 11036406 - 11036485
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatga---aatattttaattgtttt 350  Q
    ||||||||||| |||||||||||||| | |||||||| | || ||||||||||||||  |   |||||||||||||||||    
T  11036406 catataaaactcaattaaaataatcattcttataaaatattagattttaccatgtaaataaataatattttaattgtttt 11036485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 49170428 - 49170481
Alignment:
Q  338 ttttaattgtttttcttttcaaaagacaagaatttctacttctaattcataaca 391  Q
    |||||||| |||||||||| |||||||||||||| ||||||||| || ||||||    
T  49170428 ttttaattatttttctttttaaaagacaagaattgctacttctacttaataaca 49170481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 274 - 393
Target Start/End: Original strand, 12196655 - 12196772
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttc 373  Q
    |||||||||| | ||||||||| |||| |||| |||||| ||| ||| |||  ||||  | | ||||||||| |||||||||| |||||||||||||| |    
T  12196655 catataaaacattattaaaatattcacatttagaaaagattaattttcacc--gtaaaaatacattttaattatttttctttttaaaagacaagaattgc 12196752  T
Q  374 tacttctaattcataacata 393  Q
    |||  ||| || ||||||||    
T  12196753 taccactatttaataacata 12196772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 483 - 512
Target Start/End: Complemental strand, 43656308 - 43656279
Alignment:
Q  483 aaatctatacttgatttttcgttgaacaaa 512  Q
    ||||||||||||||||||||||||||||||    
T  43656308 aaatctatacttgatttttcgttgaacaaa 43656279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 274 - 392
Target Start/End: Complemental strand, 339 - 221
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaagaataaattttaccatgtaatgaaatattttaattgtttttcttttcaaaagacaagaatttc 373  Q
    |||||||||  |||||||| |||| |||||||||||||  ||||||||||||| ||     ||||||||||| |||||||||| || | |||||||| ||    
T  339 catataaaatataattaaactaataacttttataaaaggttaaattttaccatatagatttatattttaattatttttctttttaacaaacaagaatctc 240  T
Q  374 tacttctaattcataacat 392  Q
    ||  |||||||||||||||    
T  239 tatctctaattcataacat 221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 429 - 481
Target Start/End: Complemental strand, 2015 - 1963
Alignment:
Q  429 ttttcttcctagtagaacaactctaaatcaaggcacgtcgatctttgctccgt 481  Q
    ||||||||||| | ||||||||||||||||||||||  ||||| |||||||||    
T  2015 ttttcttcctaatcgaacaactctaaatcaaggcacaccgatcattgctccgt 1963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 479
Target Start/End: Original strand, 243286 - 243332
Alignment:
Q  433 cttcctagtagaacaactctaaatcaaggcacgtcgatctttgctcc 479  Q
    ||||||| | ||||||||||||||||||||||  |||||||||||||    
T  243286 cttcctaatcgaacaactctaaatcaaggcacaccgatctttgctcc 243332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 333 - 371
Target Start/End: Original strand, 243168 - 243208
Alignment:
Q  333 aaatattttaattgtttt--tcttttcaaaagacaagaatt 371  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  243168 aaatattttaattgttttcttcttttcaaaagacaagaatt 243208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 243119 - 243155
Alignment:
Q  274 catataaaacttaattaaaataatcacttttataaaa 310  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  243119 catataaaactcaattaaaataatcactcttataaaa 243155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University