View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6553_low_24 (Length: 239)
Name: NF6553_low_24
Description: NF6553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6553_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 12932381 - 12932610
Alignment:
| Q |
1 |
tgaaaaaggattgcaaattttgtcaaggaagtccctcattccgtctgacaaaggtactaagttgaatccttgtgattactgtttgtttggcaagcaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12932381 |
tgaaaaaggattgcaaattttgtcaaggaagtccctcattccgtctgacaaaggtactaagttgaatccttgtgattattgtttgtttggcaagcaacat |
12932480 |
T |
|
| Q |
101 |
agagtttctttcagcagaacttcaaagctgaaagataataaattggatatggtgtattctgatgtgtgtggacccatggaagtggagactcttggtggta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12932481 |
agagtttctttcagcagaacttcaaagctgaaagataataaattggatatggtgtattctgatgtgtgtggacccatggaagtggagactcttggtggta |
12932580 |
T |
|
| Q |
201 |
gcagatattttgtgacgtttattgatgatg |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12932581 |
gcagatattttgtgacgtttattgatgatg |
12932610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 14175651 - 14175880
Alignment:
| Q |
1 |
tgaaaaaggattgcaaattttgtcaaggaagtccctcattccgtctgacaaaggtactaagttgaatccttgtgattactgtttgtttggcaagcaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14175651 |
tgaaaaaggattgcaaattttgtcaaggaagtccctcattccgtctgacaaaggtactaagttgaatccttgtgattattgtttgtttggcaagcaacat |
14175750 |
T |
|
| Q |
101 |
agagtttctttcagcagaacttcaaagctgaaagataataaattggatatggtgtattctgatgtgtgtggacccatggaagtggagactcttggtggta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175751 |
agagtttctttcagcagaacttcaaagctgaaagataataaattggatatggtgtattctgatgtgtgtggacccatggaagtggagactcttggtggta |
14175850 |
T |
|
| Q |
201 |
gcagatattttgtgacgtttattgatgatg |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
14175851 |
gcagatattttgtgacgtttattgatgatg |
14175880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 28610227 - 28609997
Alignment:
| Q |
1 |
tgaaaaaggattgcaaattttgtcaaggaagtccctcattccgtctgacaaaggtactaagttgaatccttgtgattactgtttgtttggcaagcaacat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28610227 |
tgaaaaaggattgcaaattttgtcaaggaagtccctcattccgtctggcaaaggtactaagttgaatccttgtgattattgtttgtttggcaagcaacat |
28610128 |
T |
|
| Q |
101 |
agagtttctttcagcagaacttcaaagctgaaagataataaattggatatggtgtattctgatgtgtgtggacccatggaagtggagactcttggtggta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28610127 |
agagtttctttcagcagaacttcaaagctgaaaggtaataaattggatatggtgtattctgatgtgtgtggacccatggaagtggagactcttggtggta |
28610028 |
T |
|
| Q |
201 |
gcagatattttgtgacg-tttattgatgatg |
230 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |
|
|
| T |
28610027 |
gcagatattttgtgacgttttattgatgatg |
28609997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 15298172 - 15298399
Alignment:
| Q |
1 |
tgaaaaaggattgcaaattttgtcaaggaagtccctcattccgtctgacaaaggtactaagttgaatccttgtgattactgtttgtttggcaagcaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
15298172 |
tgaaaaaggattgcaaattttgtcaaggaagtccctcattccatctgaaaaaggtactaagttgaatccttgtgcttactgtttgtttagcaagcaacat |
15298271 |
T |
|
| Q |
101 |
agagtttctttcagcagaacttcaaagctgaaagataataaattggatatggtgtattctgatgtgtgtggacccatggaagtggagactcttggtggta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
15298272 |
agagtttctttcagcagaacttcaaagctgaaagataataaattggatatggggtattctaatgtgtgtggaccaatggaagtggagac-cttggtggta |
15298370 |
T |
|
| Q |
201 |
gcagatattttgtgacgtttattgatgat |
229 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
15298371 |
gcagatattttgtgacgtttattaatgat |
15298399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 38995879 - 38995649
Alignment:
| Q |
1 |
tgaaaaaggattgcaaattttgt-caaggaagtccctcattccgtctgacaaaggtactaagttgaatccttgtgattactgtttgtttggcaagcaaca |
99 |
Q |
| |
|
|||||||||||| |||||||| | |||||||||| |||| | |||||||||||| ||| ||||||||||||||||| | |||||||||| || |||| |
|
|
| T |
38995879 |
tgaaaaaggattacaaatttttttcaaggaagtctttcatcctacctgacaaaggtaataaattgaatccttgtgattattttttgtttggcgagaaaca |
38995780 |
T |
|
| Q |
100 |
tagagtttctttcagcagaacttcaaagctgaaagataataaattggatatggtgtattctgatgtgtgtggacccatggaagtggagactcttggtggt |
199 |
Q |
| |
|
|| ||| || || | | ||| |||||||| |||||||||| || |||||| |||||| | |||||||| |||| ||||||||||| |||||||||||| |
|
|
| T |
38995779 |
taaagtatcgttttgtaaaacatcaaagcttaaagataatatatcagatatgatgtattataatgtgtgtagaccaatggaagtggatactcttggtggt |
38995680 |
T |
|
| Q |
200 |
agcagatattttgtgacgtttattgatgatg |
230 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| |
|
|
| T |
38995679 |
agcaaatattttgtgatgtttattgatgatg |
38995649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 24872161 - 24872077
Alignment:
| Q |
116 |
agaacttcaaagctgaaagataataaattggatatggtgtattctgatgtgtgtggacccatggaagtggagactcttggtggtag |
201 |
Q |
| |
|
||||| |||||| ||||| |||||| |||| ||||||||||||||| || ||| |||| ||||||||||||||||||| ||||||| |
|
|
| T |
24872161 |
agaacctcaaagttgaaa-ataatatattgaatatggtgtattctgctgcgtgcggactcatggaagtggagactcttcgtggtag |
24872077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 24874103 - 24874000
Alignment:
| Q |
3 |
aaaaaggattgcaaattttgtcaaggaagtccctcattccgtctgacaaaggtactaagttgaatccttgtgattactgtttgtttggcaagcaacatag |
102 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| || | ||| ||||| |||||||||||||| | ||||| ||||||||| ||||||||||| |
|
|
| T |
24874103 |
aaaaaagattgcaaattctgtcaaggaagtccctcgttgcatctcacaaatgtactaagttgaattatcatgattgttgtttgtttttgaagcaacatag |
24874004 |
T |
|
| Q |
103 |
agtt |
106 |
Q |
| |
|
|||| |
|
|
| T |
24874003 |
agtt |
24874000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University