View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6553_low_25 (Length: 239)
Name: NF6553_low_25
Description: NF6553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6553_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 19293243 - 19293380
Alignment:
| Q |
85 |
tagtttttgttgcgtatgtggaggtacctacactaaactcaaaggctgcaacatatgcatttgttatcagcagagaaacatatatccgactcaacaacat |
184 |
Q |
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| T |
19293243 |
tagtttttgttgcgtatgtggaggtacctacactaaactcaaaggctgcaacatatgcatttgttataagcagagaaacatatatccgactcaacaacat |
19293342 |
T |
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| Q |
185 |
gaagatattccctttggagttttcacaggtgaaggtct |
222 |
Q |
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| T |
19293343 |
gaagatattccctttggagttttcacaggtgaaggtct |
19293380 |
T |
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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 19292687 - 19292756
Alignment:
| Q |
1 |
caataggtatcataattaatctttaaaattctacatcctcctcttgtgacaatagttgatgtttatctct |
70 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19292687 |
caataggtatcataattaatctttaaaattctacatccacctcttgtgacaatagttgatgtttatctct |
19292756 |
T |
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