View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6553_low_27 (Length: 203)
Name: NF6553_low_27
Description: NF6553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6553_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 15 - 173
Target Start/End: Complemental strand, 12932078 - 12931920
Alignment:
| Q |
15 |
aatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttatacatcgtaaagaattctttgttggaagtagcatgataagaagct |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
12932078 |
aatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttgtacatcgtaaagaattctttattggaagtagcgtgataagaagct |
12931979 |
T |
|
| Q |
115 |
gctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaac |
173 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12931978 |
gctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaac |
12931920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 173
Target Start/End: Complemental strand, 14175348 - 14175190
Alignment:
| Q |
15 |
aatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttatacatcgtaaagaattctttgttggaagtagcatgataagaagct |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||| |
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| T |
14175348 |
aatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttgtacattgtaaagaattctttattggaagtagcgtgataagaagct |
14175249 |
T |
|
| Q |
115 |
gctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaac |
173 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14175248 |
gctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaac |
14175190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 28610530 - 28610688
Alignment:
| Q |
15 |
aatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttatacatcgtaaagaattctttgttggaagtagcatgataagaagct |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
28610530 |
aatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttgtacatcgtaaagaattctttattggaagtagcgtgataagaagct |
28610629 |
T |
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| Q |
115 |
gctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaac |
173 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
28610630 |
gctgagtcaatgacccattaaacacatgaatctgcaagatgacattcttcttcttcaac |
28610688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 38996133 - 38996292
Alignment:
| Q |
15 |
aatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttatacatcgtaaagaattc-tttgttggaagtagcatgataagaagc |
113 |
Q |
| |
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||||| || ||||||| |||| ||||| ||||||||| ||||||||||| |||| ||||||||||||||||| |||||||||||| |||||| ||||| |
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| T |
38996133 |
aatatttgtaatgctactatttcccatatttactttgtcaaagtctcctgctttgtacatcgtaaagaattcttttgttggaagtgacatgattagaaga |
38996232 |
T |
|
| Q |
114 |
tgctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaac |
173 |
Q |
| |
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|| ||||||||| | |||||||||| ||||| |||||| ||| ||||||||||||||||| |
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| T |
38996233 |
tgttgagtcaattatccattcaacaaatgaaactgcaatatggcattcttcttcttcaac |
38996292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 53 - 173
Target Start/End: Original strand, 24874448 - 24874568
Alignment:
| Q |
53 |
caaagtctcctactttatacatcgtaaagaattctttgttggaagtagcatgataagaagctgctgagtcaatgacccattcaacacatgaatctgcaac |
152 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||| ||||||| ||||||||||||| ||| |
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| T |
24874448 |
caaagtctcctactttgtacatcacaaagaattctttgttggaagtggcatgataagaagatgcagagtcaacgacccatataacacatgaatctacaat |
24874547 |
T |
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| Q |
153 |
atgacattcttcttcttcaac |
173 |
Q |
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| |||||||||||| |||||| |
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| T |
24874548 |
acgacattcttctttttcaac |
24874568 |
T |
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