View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6553_low_4 (Length: 508)

Name: NF6553_low_4
Description: NF6553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6553_low_4
NF6553_low_4
[»] chr4 (10 HSPs)
chr4 (11-348)||(2918008-2918342)
chr4 (341-502)||(2917456-2917616)
chr4 (377-490)||(10396123-10396235)
chr4 (377-494)||(10396408-10396524)
chr4 (386-494)||(11197227-11197334)
chr4 (377-497)||(53468045-53468163)
chr4 (453-494)||(6975504-6975545)
chr4 (377-483)||(34946466-34946570)
chr4 (457-494)||(36608709-36608746)
chr4 (457-494)||(50002497-50002534)
[»] chr7 (4 HSPs)
chr7 (377-493)||(27597977-27598092)
chr7 (438-494)||(21416191-21416247)
chr7 (453-494)||(19122798-19122839)
chr7 (453-494)||(34218084-34218125)
[»] chr2 (5 HSPs)
chr2 (377-494)||(28226329-28226445)
chr2 (377-494)||(28226647-28226762)
chr2 (377-494)||(30219931-30220047)
chr2 (377-497)||(13792541-13792660)
chr2 (453-493)||(36178320-36178360)
[»] chr3 (3 HSPs)
chr3 (377-494)||(53595952-53596068)
chr3 (377-494)||(53596267-53596383)
chr3 (457-495)||(42342437-42342475)
[»] chr8 (3 HSPs)
chr8 (402-483)||(3670860-3670940)
chr8 (454-497)||(12156705-12156748)
chr8 (453-494)||(9507849-9507890)
[»] chr5 (4 HSPs)
chr5 (377-490)||(13042988-13043100)
chr5 (377-490)||(13112984-13113096)
chr5 (449-494)||(35150069-35150114)
chr5 (458-494)||(36522287-36522323)
[»] chr6 (1 HSPs)
chr6 (453-494)||(1127427-1127468)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 11 - 348
Target Start/End: Complemental strand, 2918342 - 2918008
Alignment:
Q  11 cacagaaattaattatttgccgtacaataattattttcaatattatgttttgtnnnnnnnncataatattagcatatgtaataattaagcatgtattaat 110  Q
    ||||||||||||||| ||||||||||||   ||||||||||||||||||||||        |||||||||| ||||||||||||||||||||||||||||    
T  2918342 cacagaaattaattagttgccgtacaat---tattttcaatattatgttttgtaaaaaaaacataatattaacatatgtaataattaagcatgtattaat 2918246  T
Q  111 caattgtgtcaattattatgctatattttgccaaataagattaattatgttatcttggttgaaccggtttgtgaaatgtcgcaaaactattagttgataa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2918245 caattgtgtcaattattatgctatattttgccaaataagattaattatgttatcttggttgaaccggtttgtgaaatgtcgcaaaactattagttgataa 2918146  T
Q  211 tgttagtgaatgatttgacatttttctaactctatatgacaaccnnnnnnncagtgagagaatttggagtgatgttatttgttgttgaacgtgattgttt 310  Q
    ||||||||||||||||||||||||| ||||||||||||||||||       |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2918145 tgttagtgaatgatttgacatttttttaactctatatgacaacctttttttcagttagagaatttggagtgatgttatttgttgttgaacgtgattgttt 2918046  T
Q  311 taaggagaaatgagacttttaaaatgagttattacgat 348  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2918045 taaggagaaatgagacttttaaaatgagttattacgat 2918008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 341 - 502
Target Start/End: Complemental strand, 2917616 - 2917456
Alignment:
Q  341 attacgatgatggaaagaagatcaatatttaatacggttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaata 440  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2917616 attacgatgatggaaagaagatcattatttaatacggttggaaatcaagtctgagtgatgatgtctcacgtcgactat-aaatggagtaaatgttgaata 2917518  T
Q  441 tacaagagaagagactcataaatccattatcttagggttttgggtaagagtgtgatgatgtc 502  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  2917517 tacaagagaagagactcataaatccactatcttagggttttggctaagagtgtgatgatgtc 2917456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 490
Target Start/End: Original strand, 10396123 - 10396235
Alignment:
Q  377 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 476  Q
    |||||||||||||| |||||||| ||||||||| ||||| |  |||||||| |||||||||||||| ||||||  |||| |||||| |||||  ||||||    
T  10396123 gttggaaatcaagtgtgagtgattatgtctcacatcgacaag-aaatggaggaaatgttgaatatataagagagaagacccataaacccattgccttagg 10396221  T
Q  477 gttttgggtaagag 490  Q
    ||||| ||||||||    
T  10396222 gttttaggtaagag 10396235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 377 - 494
Target Start/End: Original strand, 10396408 - 10396524
Alignment:
Q  377 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 476  Q
    |||||||||||||| |||||||| ||||||||  | |||||  |||||||| |||||||| ||||| |||||| ||||| |||||| |||||  ||||||    
T  10396408 gttggaaatcaagtgtgagtgattatgtctcatattgactag-aaatggaggaaatgttggatatataagagaggagacccataaacccattgccttagg 10396506  T
Q  477 gttttgggtaagagtgtg 494  Q
    ||||||| ||||||||||    
T  10396507 gttttggataagagtgtg 10396524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 386 - 494
Target Start/End: Original strand, 11197227 - 11197334
Alignment:
Q  386 caagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagggttttgggt 485  Q
    ||||| |||||||| ||| ||||| |||||||  |||||||| ||| |||| ||||| |||||| ||||| |||||| |||||  |||||||||||||||    
T  11197227 caagtgtgagtgattatgcctcacatcgactag-aaatggaggaaacgttggatatataagagaggagacccataaacccattgccttagggttttgggt 11197325  T
Q  486 aagagtgtg 494  Q
    |||||||||    
T  11197326 aagagtgtg 11197334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 497
Target Start/End: Complemental strand, 53468163 - 53468045
Alignment:
Q  377 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 476  Q
    |||||||||||||| |||||||| ||||||||| |||| ||  |||||||| |||||||||||||| || ||| ||||| ||||||  |||| | ||| |    
T  53468163 gttggaaatcaagtgtgagtgataatgtctcacatcgatta-gaaatggagcaaatgttgaatatataa-agaggagacccataaactcattgttttaag 53468066  T
Q  477 gttttgggtaagagtgtgatg 497  Q
     |||||| |||| ||||||||    
T  53468065 cttttggataagtgtgtgatg 53468045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 453 - 494
Target Start/End: Complemental strand, 6975545 - 6975504
Alignment:
Q  453 gactcataaatccattatcttagggttttgggtaagagtgtg 494  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  6975545 gactcataaatccattatcttaagattttgggtaagagtgtg 6975504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 483
Target Start/End: Complemental strand, 34946570 - 34946466
Alignment:
Q  377 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 476  Q
    |||||||||||||| || ||||| ||||||||| |||||||  |||||||| ||| |||| ||||  |||||||||||| |||||| |   | |||||||    
T  34946570 gttggaaatcaagtgtg-gtgataatgtctcacatcgactag-aaatggagcaaacgttggatatttaagagaagagacccataaacctgatgtcttagg 34946473  T
Q  477 gttttgg 483  Q
    |||||||    
T  34946472 gttttgg 34946466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 494
Target Start/End: Complemental strand, 36608746 - 36608709
Alignment:
Q  457 cataaatccattatcttagggttttgggtaagagtgtg 494  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  36608746 cataaatccattgtcttaaggttttgggtaagagtgtg 36608709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 494
Target Start/End: Original strand, 50002497 - 50002534
Alignment:
Q  457 cataaatccattatcttagggttttgggtaagagtgtg 494  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  50002497 cataaatccattgtcttaaggttttgggtaagagtgtg 50002534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 377 - 493
Target Start/End: Original strand, 27597977 - 27598092
Alignment:
Q  377 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 476  Q
    |||||||||||||| |||||||| ||||||||| |||||||| |||| ||| ||| |||| ||||| |||||| ||||| |||||| ||||| |||||||    
T  27597977 gttggaaatcaagtgtgagtgataatgtctcacatcgactat-aaattgagcaaacgttggatatataagagaggagacccataaacccattgtcttagg 27598075  T
Q  477 gttttgggtaagagtgt 493  Q
    |||||| ||||||||||    
T  27598076 gttttgcgtaagagtgt 27598092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 494
Target Start/End: Complemental strand, 21416247 - 21416191
Alignment:
Q  438 atatacaagagaagagactcataaatccattatcttagggttttgggtaagagtgtg 494  Q
    ||||| |||||| ||||| |||||| |||||  ||||||||||||||||||||||||    
T  21416247 atatataagagaggagacccataaacccattgccttagggttttgggtaagagtgtg 21416191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 494
Target Start/End: Original strand, 19122798 - 19122839
Alignment:
Q  453 gactcataaatccattatcttagggttttgggtaagagtgtg 494  Q
    ||||||||||||||||  |||| |||||||||||||||||||    
T  19122798 gactcataaatccattgccttaaggttttgggtaagagtgtg 19122839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 494
Target Start/End: Complemental strand, 34218125 - 34218084
Alignment:
Q  453 gactcataaatccattatcttagggttttgggtaagagtgtg 494  Q
    |||||||||| ||||| ||||| |||||||||||||||||||    
T  34218125 gactcataaacccattgtcttaaggttttgggtaagagtgtg 34218084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 494
Target Start/End: Original strand, 28226329 - 28226445
Alignment:
Q  377 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 476  Q
    |||||||||||||| |||||| | ||||| ||| |||||||  |||||||| ||| |||| ||||| |||||| ||||| ||||||  |||| |||||||    
T  28226329 gttggaaatcaagtgtgagtgttaatgtcccacatcgactag-aaatggaggaaacgttggatatataagagaggagacccataaacacattgtcttagg 28226427  T
Q  477 gttttgggtaagagtgtg 494  Q
    ||||| ||||||||||||    
T  28226428 gttttaggtaagagtgtg 28226445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 494
Target Start/End: Original strand, 28226647 - 28226762
Alignment:
Q  377 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 476  Q
    |||||||||||||| ||| |||| || || ||| ||||| |  |||||| | |||| ||| ||||| |||||| |||||||||||| ||||| ||||| |    
T  28226647 gttggaaatcaagtgtgactgataatatcacacatcgacaag-aaatggggcaaatattggatatataagagaggagactcataaacccattgtctta-g 28226744  T
Q  477 gttttgggtaagagtgtg 494  Q
    ||||| ||||||||||||    
T  28226745 gtttttggtaagagtgtg 28226762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 494
Target Start/End: Complemental strand, 30220047 - 30219931
Alignment:
Q  377 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 476  Q
    |||||||||||||| |||| ||| ||||| ||| |||||||  || ||||| |||||||| |||   |||||| ||||| |||||| | ||| |||||||    
T  30220047 gttggaaatcaagtgtgagcgattatgtcccacatcgactag-aactggaggaaatgttggatacttaagagaggagacccataaaccaattgtcttagg 30219949  T
Q  477 gttttgggtaagagtgtg 494  Q
    |||||| ||| |||||||    
T  30219948 gttttgtgtaggagtgtg 30219931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 497
Target Start/End: Complemental strand, 13792660 - 13792541
Alignment:
Q  377 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 476  Q
    |||||||||||||| |||||||| ||||| ||| || ||||  |||||||| |||| ||  ||||| |||||| ||||| | || | |||||  |||  |    
T  13792660 gttggaaatcaagtgtgagtgattatgtcccacatcaactag-aaatggaggaaatatttgatatataagagaggagacccgtacacccattgacttgag 13792562  T
Q  477 gttttgggtaagagtgtgatg 497  Q
    |||||||||||||||||||||    
T  13792561 gttttgggtaagagtgtgatg 13792541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 493
Target Start/End: Complemental strand, 36178360 - 36178320
Alignment:
Q  453 gactcataaatccattatcttagggttttgggtaagagtgt 493  Q
    |||||||||| ||||| ||||| ||||||||||||||||||    
T  36178360 gactcataaacccattgtcttaaggttttgggtaagagtgt 36178320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 494
Target Start/End: Original strand, 53595952 - 53596068
Alignment:
Q  377 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 476  Q
    ||||||||||||||  ||||||| ||||| ||| | |||||  |||| ||| |||||||| ||||| |||||| ||||| |||||| || ||| |||| |    
T  53595952 gttggaaatcaagtgcgagtgattatgtcccacattgactag-aaatagagaaaatgttggatatataagagaggagacccataaacccgttaccttaag 53596050  T
Q  477 gttttgggtaagagtgtg 494  Q
    ||||||||||||||||||    
T  53596051 gttttgggtaagagtgtg 53596068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 494
Target Start/End: Original strand, 53596267 - 53596383
Alignment:
Q  377 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 476  Q
    ||||||||||||||  ||||||| ||||| ||| | |||||  |||| ||| |||||||| ||||| |||||| ||||| |||||| || ||| |||| |    
T  53596267 gttggaaatcaagtgcgagtgattatgtcccacattgactag-aaatagagaaaatgttggatatataagagaggagacccataaacccgttaccttaag 53596365  T
Q  477 gttttgggtaagagtgtg 494  Q
    ||||||||||||||||||    
T  53596366 gttttgggtaagagtgtg 53596383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 495
Target Start/End: Complemental strand, 42342475 - 42342437
Alignment:
Q  457 cataaatccattatcttagggttttgggtaagagtgtga 495  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  42342475 cataaatccattgtcttaaggttttgggtaagagtgtga 42342437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 483
Target Start/End: Complemental strand, 3670940 - 3670860
Alignment:
Q  402 tgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagggttttgg 483  Q
    |||||||| |||||||  |||||||| ||| |||| ||||| |||||| ||||| |||||||||| || |||||||||||||    
T  3670940 tgtctcacatcgactag-aaatggaggaaacgttggatatataagagatgagacccataaatccactaccttagggttttgg 3670860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 497
Target Start/End: Complemental strand, 12156748 - 12156705
Alignment:
Q  454 actcataaatccattatcttagggttttgggtaagagtgtgatg 497  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||    
T  12156748 actcataaacccattgtcttaaggttttgggtaagagtgtgatg 12156705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 494
Target Start/End: Original strand, 9507849 - 9507890
Alignment:
Q  453 gactcataaatccattatcttagggttttgggtaagagtgtg 494  Q
    |||||||||| |||||| |||| |||||||||||||||||||    
T  9507849 gactcataaacccattaccttaaggttttgggtaagagtgtg 9507890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 490
Target Start/End: Original strand, 13042988 - 13043100
Alignment:
Q  377 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 476  Q
    |||||||||||||  |||||||| || || ||| |||||||  |||| ||| |||  ||| ||||| |||||| ||||| |||||| |||| ||||||||    
T  13042988 gttggaaatcaagagtgagtgataatctcccacatcgactag-aaatagagcaaacattggatatataagagaggagacccataaacccatcatcttagg 13043086  T
Q  477 gttttgggtaagag 490  Q
     |||||||||||||    
T  13043087 attttgggtaagag 13043100  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 490
Target Start/End: Original strand, 13112984 - 13113096
Alignment:
Q  377 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 476  Q
    |||||||||||||  |||||||| || || ||| |||||||  |||| ||| |||  ||| ||||| |||||| ||||| |||||| |||| ||||||||    
T  13112984 gttggaaatcaagagtgagtgataatctcccacatcgactag-aaatagagcaaacattggatatataagagaggagacccataaacccatcatcttagg 13113082  T
Q  477 gttttgggtaagag 490  Q
     |||||||||||||    
T  13113083 attttgggtaagag 13113096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 494
Target Start/End: Original strand, 35150069 - 35150114
Alignment:
Q  449 aagagactcataaatccattatcttagggttttgggtaagagtgtg 494  Q
    ||||||| |||||||||||| ||||| |||||||||||| ||||||    
T  35150069 aagagacccataaatccattgtcttaaggttttgggtaaaagtgtg 35150114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 494
Target Start/End: Complemental strand, 36522323 - 36522287
Alignment:
Q  458 ataaatccattatcttagggttttgggtaagagtgtg 494  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  36522323 ataaacccattatcttaaggttttgggtaagagtgtg 36522287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 494
Target Start/End: Original strand, 1127427 - 1127468
Alignment:
Q  453 gactcataaatccattatcttagggttttgggtaagagtgtg 494  Q
    |||||||||| |||||| |||| |||||||||||||||||||    
T  1127427 gactcataaacccattaccttaaggttttgggtaagagtgtg 1127468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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