View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6553_low_5 (Length: 449)
Name: NF6553_low_5
Description: NF6553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6553_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 2655922 - 2655492
Alignment:
| Q |
1 |
cgaggatcatctgtttgatgnnnnnnnaatgatgttacctctttgtctacattttctttgtcgttaaaaatcagatggcagattatgttctgttcatcta |
100 |
Q |
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| T |
2655922 |
cgaggatcatatgtttgatgtttttttaatgatgttacctgtttatctacattttctttgtcgttaataatcagatggcagattatgttctgttcatcta |
2655823 |
T |
|
| Q |
101 |
ttatgcaattagtcatttgatttcaagactttgnnnnnnn-caattgctatttcctataatctaatattacgaatccataataaaagtcattgacatgtt |
199 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2655822 |
ttatacaattagtcatttgatttcaagactttgtttttcttcaattgctatttgctataatctaatattacgaatccataataaaagtcattgacatgtt |
2655723 |
T |
|
| Q |
200 |
ttcgtattattttccttcgcggctgataataatttggttcatttgattgattagtctaaaccacaatt-agtcattttgattgatcactgattccaataa |
298 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| || | | | |||||||||||| |
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| T |
2655722 |
ttcgtattattttccttcgctgctaataataatttggttcatttgattgattagtctaaaccacaattcaggccat----------agtgattccaataa |
2655633 |
T |
|
| Q |
299 |
ggcaactcttttaatttataatcacaaattgaaatctccaaatgcagttttacatagcaaaattatttctgcatcaatgtcattctgttttaacgaagca |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
2655632 |
ggcaactcttttaatttataatcacaaattgaaatctccaaatgcagttttacatagcaaaattgtttctgcatcaatgtcattctgtcttaacgaagca |
2655533 |
T |
|
| Q |
399 |
aacttaattttatgaatgcttctccttcttttacgcctatg |
439 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2655532 |
aacttaattttatgaatgcttctccttcttttacgcctatg |
2655492 |
T |
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