View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6553_low_6 (Length: 423)
Name: NF6553_low_6
Description: NF6553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6553_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 14014498 - 14014624
Alignment:
| Q |
18 |
gtataaacttataacactaaccctaattcctagatttcaaacagagatgcataatgctcgatcaatttcctacatgaaaccaaattacagcaacacacag |
117 |
Q |
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| T |
14014498 |
gtataaacttataacactaaccctaattcctagatttcaaccagagatgcataatgctcgatcaatttcctacatgaaaccaaattacagcaacacacag |
14014597 |
T |
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| Q |
118 |
atttcaaatataagtaaatctagcaca |
144 |
Q |
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| T |
14014598 |
atttcaaatataagtaaatctagcaca |
14014624 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 14014673 - 14014705
Alignment:
| Q |
193 |
cttacgatcctgaagggtatcaaaagccacacg |
225 |
Q |
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| T |
14014673 |
cttacgatccagaagggtatcaaaagccacacg |
14014705 |
T |
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