View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6553_low_8 (Length: 386)
Name: NF6553_low_8
Description: NF6553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6553_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 51511519 - 51511158
Alignment:
| Q |
1 |
tacttcatcatggaactggtgtctccaaaattattgttcaaccttctactaagagaattcatcatgatgctctctatgaagaagttggttgtgaaatttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51511519 |
tacttcatcatggaactggtgtctccaaaattattgttcaaccttctactaagagaattcatcatgatgctctctatgaagaagttggttgtgaaatttc |
51511420 |
T |
|
| Q |
101 |
acaagacttgtcgccttgtggtctcatccttggcatcaaacaaccagaggtacaattctttcctcctttcttgatattaattactaggtacatattaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51511419 |
acaagacttgtcgccttgtggtctcatccttggcatcaaacaaccagatgtacaattctttcctcctttcttgatattaattactaggtacatattaagt |
51511320 |
T |
|
| Q |
201 |
ttatggtaaattaaggtatctgcacgttcaactatagagattaatcgctcaatgtaacggatgtatgtttaagtagttgacctctttcaacgtacgtttt |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51511319 |
ttatggtaaattaaggtatctacacgttcaactatagagattaatcgctcaatgtaacagatgtatgtttaagtagttgacctctttcaacgtacgtttt |
51511220 |
T |
|
| Q |
301 |
ttgttgtacgcactgatcaggatcgaactctaaactagatagatattttattgtatatatat |
362 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51511219 |
ttgttgtacgcactgatcaggatcgaactctaaactagatagatattttattgtatatatat |
51511158 |
T |
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