View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6553_low_9 (Length: 362)
Name: NF6553_low_9
Description: NF6553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6553_low_9 |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 10162143 - 10162486
Alignment:
| Q |
1 |
tttgaagactcgcgctactatagtatcttggttggtttcagggctccaacattgcttctctaacatagccaaattaaatcatatgtatgttgagaaccca |
100 |
Q |
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| T |
10162143 |
tttgaagactcgcgctactatagtatcttggttggtttcagggctccaacattgcttctctaacatagccaaaataaatcatatgtatgtcgagaaccca |
10162242 |
T |
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| Q |
101 |
tatatcaccgtgttcctttctcatagccatcttcttccatcttcgctaattgtttccttttccatcatgtttattggaccctcccaccaaaaggaattca |
200 |
Q |
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| T |
10162243 |
tatatcaccgtgttcctttctcatagccagcttcttccatcttcgctaattgtttccttttccatcatgtttattggaccctcccaccaaaaggaattca |
10162342 |
T |
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| Q |
201 |
acattttttgaatttcatcccctaaagttgttggcaagaggaatgaactcataaaatattaaagcttataaattataacaattgagattaactgatatta |
300 |
Q |
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| T |
10162343 |
acattttttgaatttcatcccctaaagttgttggcaagaggaatgaactcataaaatattaaagcttataaattataacaattgagattaactgatatta |
10162442 |
T |
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| Q |
301 |
aatgataatgtnnnnnnnnttacacattcatttaatgatatatc |
344 |
Q |
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| T |
10162443 |
aatgataatgtaaaaaaaattacacattcatttaatgatatatc |
10162486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 30043 - 29798
Alignment:
| Q |
1 |
tttgaagactcgcgctactatagtatcttggttggtttcagggctccaacattgcttctctaacatagccaaattaaatca-tatgtatgttgagaaccc |
99 |
Q |
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| T |
30043 |
tttgaagactcgctttactatagtatcttggttggtttctagcctccaaccttgcttccctagcatacccaaattaaatctgtacagatgtaaaaaactc |
29944 |
T |
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| Q |
100 |
atatatcaccgtgttcctttctcatagccatcttcttccatcttcgctaattgtttccttttccatcatgtttattggaccctcccaccaaaaggaattc |
199 |
Q |
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||| ||| |||||| ||||||||||| | ||| | |||| || || |||| ||| ||||||||||| | |||| ||||| ||||||||| |||||| |
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| T |
29943 |
atac--cactgtgttcttttctcatagctagcttgtcccattttagcaaatttattcgttttccatcatttgtatttgaccc--ccaccaaaaagaattc |
29848 |
T |
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| Q |
200 |
aacattttttgaatttcatcccctaaagttgttggcaagaggaatgaactc |
250 |
Q |
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| T |
29847 |
aacatttttt-aatttcatctcctaaggttgttgacaagaggaatgaactc |
29798 |
T |
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