View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6554_high_1 (Length: 205)

Name: NF6554_high_1
Description: NF6554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6554_high_1
NF6554_high_1
[»] chr3 (18 HSPs)
chr3 (18-183)||(28140425-28140589)
chr3 (19-147)||(27905475-27905603)
chr3 (19-79)||(28475303-28475363)
chr3 (23-79)||(28501099-28501155)
chr3 (19-79)||(8540835-8540895)
chr3 (38-125)||(17752404-17752490)
chr3 (38-125)||(19053724-19053810)
chr3 (72-147)||(27995393-27995470)
chr3 (102-147)||(28501052-28501097)
chr3 (87-147)||(28076361-28076422)
chr3 (19-59)||(28127037-28127077)
chr3 (19-59)||(28516405-28516445)
chr3 (20-79)||(28476050-28476109)
chr3 (19-50)||(8542915-8542946)
chr3 (42-79)||(8542572-8542609)
chr3 (19-59)||(28140970-28141008)
chr3 (98-126)||(28155924-28155952)
chr3 (98-126)||(28174969-28174997)
[»] chr4 (1 HSPs)
chr4 (87-147)||(9392813-9392874)
[»] chr7 (1 HSPs)
chr7 (93-121)||(8697411-8697439)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 28140425 - 28140589
Alignment:
Q  18 gctttaacaattttcagtccatattttaattaattgtttacagtgaccaagttctagatttcatacgattattacaagggtttataaatcaacttgagtt 117  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28140425 gctttaacaattttcagtcgatattttaattaattgtttacagtgaccaagttctagatttcatacgattattacaagggtttataaatcaacttgagtt 28140524  T
Q  118 ttatgctttctattatcttttagacaaacctctaaaacaaaactctaacacttatagtattattta 183  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||    
T  28140525 ttatgctttctattatcttttagacaaa-ctctaaaacaaaactctaacacttatattaatattta 28140589  T

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Target: chr3; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 27905475 - 27905603
Alignment:
Q  19 ctttaacaattttcagtccatattttaattaattgtttacagtgaccaagttctagatttcatacgattattacaagggtttataaatcaacttgagttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || || ||||||||||||||||||||||||||||||||    
T  27905475 ctttaacaattttcagtccatattttaattaattgtttacagtgaccaagttctagattttttaagagtattacaagggtttataaatcaacttgagttt 27905574  T
Q  119 tatgctttctattatcttttagacaaacc 147  Q
    |||||||| ||||||||||||||||||||    
T  27905575 tatgctttgtattatcttttagacaaacc 27905603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 28475363 - 28475303
Alignment:
Q  19 ctttaacaattttcagtccatattttaattaattgtttacagtgaccaagttctagatttc 79  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  28475363 ctttaacaattttcagtcgatactttaattaattgtttacagtgaccaagttctagatttc 28475303  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 28501155 - 28501099
Alignment:
Q  23 aacaattttcagtccatattttaattaattgtttacagtgaccaagttctagatttc 79  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  28501155 aacaattttcagtcaatattttaattaattgtttacagtgaccaagttgtagatttc 28501099  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 8540895 - 8540835
Alignment:
Q  19 ctttaacaattttcagtccatattttaattaattgtttacagtgaccaagttctagatttc 79  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||| || |||||    
T  8540895 ctttaacaattttcagtcgatattttaattaattgtttacagggaccaagttttatatttc 8540835  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 17752490 - 17752404
Alignment:
Q  38 atattttaattaattgtttacagtgaccaagttctagatttcatacgattattacaagggtttataaatcaacttgagttttatgctt 125  Q
    ||||||||||| | ||||||||| ||| ||||| ||| |||| |  || |||||||||||||||||||||||||||||||||||||||    
T  17752490 atattttaatttactgtttacagggac-aagttttaggtttctttagagtattacaagggtttataaatcaacttgagttttatgctt 17752404  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 19053810 - 19053724
Alignment:
Q  38 atattttaattaattgtttacagtgaccaagttctagatttcatacgattattacaagggtttataaatcaacttgagttttatgctt 125  Q
    ||||||||||| | ||||||||| ||| ||||| ||| |||| |  || |||||||||||||||||||||||||||||||||||||||    
T  19053810 atattttaatttactgtttacagggac-aagttttaggtttctttagagtattacaagggtttataaatcaacttgagttttatgctt 19053724  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 27995393 - 27995470
Alignment:
Q  72 tagatttcatacgattattacaagggtttataaatcaacttgagttttatgctt--tctattatcttttagacaaacc 147  Q
    |||||||| || || |||||||||||||| ||||||||||||||||||||||||  | |||||||||||||| |||||    
T  27995393 tagatttcttaagagtattacaagggtttgtaaatcaacttgagttttatgctttgtatattatcttttagagaaacc 27995470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 28501097 - 28501052
Alignment:
Q  102 taaatcaacttgagttttatgctttctattatcttttagacaaacc 147  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  28501097 taaatcaacttgagttttatgctttgtattatcttttagacaaacc 28501052  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 28076361 - 28076422
Alignment:
Q  87 tattacaagggtttataaatcaacttgagttttatgc-tttctattatcttttagacaaacc 147  Q
    |||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||| |||||    
T  28076361 tattacaagggtttataaatcaacttgacttttatgcttttgtattattttttagaaaaacc 28076422  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 28127037 - 28127077
Alignment:
Q  19 ctttaacaattttcagtccatattttaattaattgtttaca 59  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  28127037 ctttaacaattttcagtcaatattttaattaattgtttaca 28127077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 28516445 - 28516405
Alignment:
Q  19 ctttaacaattttcagtccatattttaattaattgtttaca 59  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  28516445 ctttaacgattttcagtccatattttaattaattgtttaca 28516405  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 28476109 - 28476050
Alignment:
Q  20 tttaacaattttcagtccatattttaattaattgtttacagtgaccaagttctagatttc 79  Q
    |||||||||||  |||| |||||||||||||||||||| || ||||||||| ||||||||    
T  28476109 tttaacaatttctagtcgatattttaattaattgtttagagggaccaagttttagatttc 28476050  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 8542946 - 8542915
Alignment:
Q  19 ctttaacaattttcagtccatattttaattaa 50  Q
    ||||||||||||||||||||||||||||||||    
T  8542946 ctttaacaattttcagtccatattttaattaa 8542915  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 8542609 - 8542572
Alignment:
Q  42 tttaattaattgtttacagtgaccaagttctagatttc 79  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  8542609 tttaattaattgtttacagggaccaagttttagatttc 8542572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 28140970 - 28141008
Alignment:
Q  19 ctttaacaattttcagtccatattttaattaattgtttaca 59  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  28140970 ctttaacaattttcagtc--tattttaattaattgtttaca 28141008  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 28155924 - 28155952
Alignment:
Q  98 tttataaatcaacttgagttttatgcttt 126  Q
    |||||||||||||||||||||||||||||    
T  28155924 tttataaatcaacttgagttttatgcttt 28155952  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 28174969 - 28174997
Alignment:
Q  98 tttataaatcaacttgagttttatgcttt 126  Q
    |||||||||||||||||||||||||||||    
T  28174969 tttataaatcaacttgagttttatgcttt 28174997  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 9392874 - 9392813
Alignment:
Q  87 tattacaagggtttataaatcaacttgagttttatgc-tttctattatcttttagacaaacc 147  Q
    |||| |||||||||||||||||||||||||||||||| ||| |||||| ||||||| |||||    
T  9392874 tattgcaagggtttataaatcaacttgagttttatgcttttgtattattttttagagaaacc 9392813  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 8697439 - 8697411
Alignment:
Q  93 aagggtttataaatcaacttgagttttat 121  Q
    |||||||||||||||||||||||||||||    
T  8697439 aagggtttataaatcaacttgagttttat 8697411  T

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