View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6554_low_1 (Length: 237)
Name: NF6554_low_1
Description: NF6554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6554_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 67 - 223
Target Start/End: Original strand, 3471714 - 3471869
Alignment:
| Q |
67 |
tttcaatttggtttcataattcactttgtgttttaccacaaattaaaagcttatttcaacaaaataaagttgatatatttgatctaaattttaaagcaat |
166 |
Q |
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| T |
3471714 |
tttcaattcggtttcataattcactttgtgttttaccacaaattagaagcttatttcaacaaaataaagttgttgtatttgatctaaattttaaagcaat |
3471813 |
T |
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| Q |
167 |
tacattaattatttttccgactatttttgcttagaaatggagactggggaaatattt |
223 |
Q |
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| T |
3471814 |
tacattaatt-tttttccaactatttttgcttagaaatggagactgaggaaatattt |
3471869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 3471574 - 3471635
Alignment:
| Q |
1 |
cataagatccgagattatatggttattgcatttgtaaaaaacatacagagaacacttgtaga |
62 |
Q |
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| T |
3471574 |
cataagatccgagattatatggttattgcatttgtaaaaaacatagagagagcacttgtaga |
3471635 |
T |
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