View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6555_high_11 (Length: 307)

Name: NF6555_high_11
Description: NF6555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6555_high_11
NF6555_high_11
[»] chr4 (9 HSPs)
chr4 (98-227)||(7462483-7462613)
chr4 (252-289)||(7462423-7462460)
chr4 (139-188)||(21321805-21321854)
chr4 (140-188)||(2065129-2065177)
chr4 (136-192)||(37245711-37245767)
chr4 (139-188)||(6753982-6754030)
chr4 (139-188)||(10575312-10575361)
chr4 (139-188)||(18442010-18442059)
chr4 (139-188)||(32576911-32576960)
[»] chr5 (6 HSPs)
chr5 (139-188)||(26597329-26597378)
chr5 (139-188)||(11375385-11375434)
chr5 (139-188)||(25731083-25731132)
chr5 (139-188)||(32632789-32632838)
chr5 (135-187)||(8388357-8388409)
chr5 (140-188)||(27292709-27292757)
[»] chr7 (6 HSPs)
chr7 (136-188)||(30493473-30493525)
chr7 (139-188)||(33224423-33224472)
chr7 (106-188)||(30824358-30824439)
chr7 (139-188)||(16732208-16732257)
chr7 (139-188)||(17710342-17710391)
chr7 (139-188)||(24139286-24139335)
[»] chr2 (3 HSPs)
chr2 (135-187)||(43293914-43293966)
chr2 (139-188)||(88834-88883)
chr2 (136-188)||(9710227-9710279)
[»] chr8 (6 HSPs)
chr8 (106-209)||(33642606-33642709)
chr8 (139-188)||(477919-477968)
chr8 (136-188)||(13415295-13415347)
chr8 (139-188)||(40588593-40588642)
chr8 (136-188)||(598100-598152)
chr8 (140-188)||(36194484-36194532)
[»] chr1 (5 HSPs)
chr1 (140-187)||(5594310-5594357)
chr1 (139-188)||(4395433-4395482)
chr1 (139-188)||(48949587-48949636)
chr1 (139-188)||(36733965-36734014)
chr1 (140-188)||(5609615-5609663)
[»] chr3 (7 HSPs)
chr3 (139-188)||(19117583-19117632)
chr3 (139-188)||(27608766-27608815)
chr3 (141-188)||(31341588-31341635)
chr3 (139-188)||(647033-647082)
chr3 (139-188)||(53497307-53497356)
chr3 (136-192)||(2121353-2121409)
chr3 (136-188)||(49525057-49525109)
[»] scaffold0003 (1 HSPs)
scaffold0003 (136-188)||(44104-44156)
[»] chr6 (2 HSPs)
chr6 (136-188)||(27443205-27443257)
chr6 (140-188)||(34104328-34104376)


Alignment Details
Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 98 - 227
Target Start/End: Complemental strand, 7462613 - 7462483
Alignment:
Q  98 agtcgaatgaacatgattgttcatacgttaatcatgttggtctgttcttggactactcaccgtatttttg-atacttatccttcttgtattgcacaatat 196  Q
    |||| ||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| |||||  ||||||||||||||| |||||||||||||    
T  7462613 agtcaaatgaacatgattgttcatacgttaatcatggtagtctgttcttagactactcaccgtttttttttatacttatccttcttatattgcacaatat 7462514  T
Q  197 ttaatcaataatatccgttaagtttgtttcc 227  Q
    ||||||||||||||| |||||||||||||||    
T  7462513 ttaatcaataatatcagttaagtttgtttcc 7462483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 289
Target Start/End: Complemental strand, 7462460 - 7462423
Alignment:
Q  252 gacaatcatttgtctatggactttgaagctaacctcgt 289  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7462460 gacaatcatttgtctatggactttgaagctaacctcgt 7462423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 21321805 - 21321854
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||||| ||| ||||||||||||| || ||||||||||||||||||    
T  21321805 ctgttcttgggctagtcaccgtattttttattcttatccttcttgtattg 21321854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 2065129 - 2065177
Alignment:
Q  140 tgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    ||||||||| ||| ||||||||||||| || ||||||||||||||||||    
T  2065129 tgttcttgggctagtcaccgtattttttattcttatccttcttgtattg 2065177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 37245767 - 37245711
Alignment:
Q  136 ggtctgttcttggactactcaccgtatttttgatacttatccttcttgtattgcaca 192  Q
    ||||||||||||| ||| |||||| |||||| |  ||||||||||||||||||||||    
T  37245767 ggtctgttcttgggctagtcaccgcatttttaactcttatccttcttgtattgcaca 37245711  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 6754030 - 6753982
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||||| ||| ||||||||||||| || ||||||||||||||||||    
T  6754030 ctgttcttgg-ctagtcaccgtattttttattcttatccttcttgtattg 6753982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 10575361 - 10575312
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    ||||| |||| ||| ||||| |||||||||| ||||||||||||||||||    
T  10575361 ctgtttttgggctagtcaccatatttttgattcttatccttcttgtattg 10575312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 18442059 - 18442010
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||||| ||| ||||||||||||| ||  |||||||||||||||||    
T  18442059 ctgttcttgggctagtcaccgtatttttaatttttatccttcttgtattg 18442010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 32576960 - 32576911
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||||| ||| |||| ||||||||| | ||||||||||||||||||    
T  32576960 ctgttcttgggctagtcactgtatttttgtttcttatccttcttgtattg 32576911  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 26597378 - 26597329
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||||||||| ||||||||| |||||| ||||||||||||||||||    
T  26597378 ctgttcttggactaatcaccgtatatttgattcttatccttcttgtattg 26597329  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 11375434 - 11375385
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||||| ||| ||||||||||||| ||  |||||||||||||||||    
T  11375434 ctgttcttgggctattcaccgtatttttaatttttatccttcttgtattg 11375385  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 25731083 - 25731132
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||||| ||| |||| |||||||| || ||||||||||||||||||    
T  25731083 ctgttcttgggctagtcactgtattttttattcttatccttcttgtattg 25731132  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 32632789 - 32632838
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||||| ||| ||||||||||||| || ||||||||||||| ||||    
T  32632789 ctgttcttgggctagtcaccgtattttttattcttatccttcttggattg 32632838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 8388357 - 8388409
Alignment:
Q  135 tggtctgttcttggactactcaccgtatttttgatacttatccttcttgtatt 187  Q
    |||| ||||||||| ||| ||||||||||||| || |||||||||||| ||||    
T  8388357 tggtttgttcttgggctagtcaccgtattttttattcttatccttcttatatt 8388409  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 27292709 - 27292757
Alignment:
Q  140 tgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    ||||||||| ||| ||||||||||||| || |||||| |||||||||||    
T  27292709 tgttcttgggctagtcaccgtattttttattcttatcattcttgtattg 27292757  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 30493525 - 30493473
Alignment:
Q  136 ggtctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    ||||||||||||| ||| ||||||||||||| || ||||||||||||||||||    
T  30493525 ggtctgttcttgggctagtcaccgtattttttattcttatccttcttgtattg 30493473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 33224472 - 33224423
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||||| ||| |||||||||||||||| |||||| |||||||||||    
T  33224472 ctgttcttgggctagtcaccgtatttttgattcttatcattcttgtattg 33224423  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 30824439 - 30824358
Alignment:
Q  106 gaacatgattgttcatacgttaatcatgttggtctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    ||||||| ||| |||||| ||||| | || ||||||||||||| ||| ||||| ||||||| || |||||| |||||||||||    
T  30824439 gaacatggttgctcataccttaattaggt-ggtctgttcttgggctagtcaccatattttttattcttatctttcttgtattg 30824358  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 16732208 - 16732257
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||||| ||| ||||||||||||| || ||||||||| ||||||||    
T  16732208 ctgttcttgggctagtcaccgtattttttattcttatcctttttgtattg 16732257  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 17710342 - 17710391
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||||| ||| ||||||||||||| || ||||||||| ||||||||    
T  17710342 ctgttcttgggctagtcaccgtattttttattcttatcctttttgtattg 17710391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 24139286 - 24139335
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||||| ||| |||||| |||||| || ||||||||||||||||||    
T  24139286 ctgttcttgggctagtcaccgcattttttattcttatccttcttgtattg 24139335  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 43293914 - 43293966
Alignment:
Q  135 tggtctgttcttggactactcaccgtatttttgatacttatccttcttgtatt 187  Q
    |||||||||||||||||| ||||||||||||| ||  ||||||||||||||||    
T  43293914 tggtctgttcttggactagtcaccgtattttttatctttatccttcttgtatt 43293966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 88834 - 88883
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||||| ||| ||||||||||||| || ||||||||||||||||||    
T  88834 ctgttcttgggctagtcaccgtattttttattcttatccttcttgtattg 88883  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 9710227 - 9710279
Alignment:
Q  136 ggtctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    ||||||||||||| ||| | |||||||||||  | ||||||||||||||||||    
T  9710227 ggtctgttcttgggctagtaaccgtatttttagttcttatccttcttgtattg 9710279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 33642709 - 33642606
Alignment:
Q  106 gaacatgattgttcatacgttaatcatgttggtctgttcttggactactcaccgtatttttgatacttatccttcttgtattgcacaatatttaatcaat 205  Q
    ||||||| |||||||||| |||   | | |||||||||||||| ||| ||||||||||||| || |||||| ||||||||||| ||| || || || |||    
T  33642709 gaacatggttgttcatactttagctagggtggtctgttcttgggctagtcaccgtattttttattcttatcattcttgtattgaacattagttgattaat 33642610  T
Q  206 aata 209  Q
    ||||    
T  33642609 aata 33642606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 477968 - 477919
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||||| ||| ||||||||||||| || ||||||||||||||||||    
T  477968 ctgttcttgggctaatcaccgtattttttattcttatccttcttgtattg 477919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 13415295 - 13415347
Alignment:
Q  136 ggtctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    ||||||||||||| ||| ||||||||||||| ||  |||||||||||||||||    
T  13415295 ggtctgttcttgggctagtcaccgtattttttatttttatccttcttgtattg 13415347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 40588642 - 40588593
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||||| ||| ||||||||||||| ||  |||||||||||||||||    
T  40588642 ctgttcttgggctagtcaccgtattttttatttttatccttcttgtattg 40588593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 598152 - 598100
Alignment:
Q  136 ggtctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    ||||||||||| | ||| ||||||||||||| || |||||||||||| |||||    
T  598152 ggtctgttcttaggctagtcaccgtattttttattcttatccttcttatattg 598100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 36194532 - 36194484
Alignment:
Q  140 tgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    ||||||||  ||| ||||||||||||| || ||||||||||||||||||    
T  36194532 tgttcttgagctagtcaccgtatttttaattcttatccttcttgtattg 36194484  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 5594310 - 5594357
Alignment:
Q  140 tgttcttggactactcaccgtatttttgatacttatccttcttgtatt 187  Q
    ||||||||||||| ||||||||||||| || |||||||||||||||||    
T  5594310 tgttcttggactaatcaccgtattttttattcttatccttcttgtatt 5594357  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 4395433 - 4395482
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||||| ||| ||||||||||||| || ||||||||||||||||||    
T  4395433 ctgttcttgggctagtcaccgtattttttattcttatccttcttgtattg 4395482  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 48949636 - 48949587
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||||| ||| ||||||||||||| || ||||||||||||||||||    
T  48949636 ctgttcttgggctagtcaccgtattttttattcttatccttcttgtattg 48949587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 36733965 - 36734014
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||||| ||| ||| ||||||||| || ||||||||||||||||||    
T  36733965 ctgttcttgggctagtcatcgtatttttaattcttatccttcttgtattg 36734014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 5609615 - 5609663
Alignment:
Q  140 tgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    ||||||||| ||| |||| |||||||| || ||||||||||||||||||    
T  5609615 tgttcttgggctagtcactgtattttttattcttatccttcttgtattg 5609663  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 19117632 - 19117583
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||| | ||| |||||||||||||||| ||||||||||||||||||    
T  19117632 ctgttcttaggctagtcaccgtatttttgattcttatccttcttgtattg 19117583  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 27608815 - 27608766
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||||| ||| ||||||||||||| || ||||||||||||||||||    
T  27608815 ctgttcttgggctagtcaccgtattttttattcttatccttcttgtattg 27608766  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 188
Target Start/End: Complemental strand, 31341635 - 31341588
Alignment:
Q  141 gttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||| ||| |||||||||||||||| |||||||||||| |||||    
T  31341635 gttcttgggctagtcaccgtatttttgattcttatccttcttatattg 31341588  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 647082 - 647033
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||||||||| |||||||||||||||   ||||| |||||||||||    
T  647082 ctgttcttggactaatcaccgtatttttgaattttatctttcttgtattg 647033  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 53497307 - 53497356
Alignment:
Q  139 ctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    |||||||||| ||| ||||||||||||| ||  |||||||||||||||||    
T  53497307 ctgttcttgggctagtcaccgtattttttattattatccttcttgtattg 53497356  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 2121353 - 2121409
Alignment:
Q  136 ggtctgttcttggactactcaccgtatttttgatacttatccttcttgtattgcaca 192  Q
    |||||||||||||  || | ||||||||||| || |||||| |||||||||||||||    
T  2121353 ggtctgttcttgggttagttaccgtattttttattcttatcattcttgtattgcaca 2121409  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 49525109 - 49525057
Alignment:
Q  136 ggtctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    ||||||||||||||||| ||||| ||||||||| | || |||| |||||||||    
T  49525109 ggtctgttcttggactagtcaccatatttttgagatttgtcctccttgtattg 49525057  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 44156 - 44104
Alignment:
Q  136 ggtctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    ||||||||||||| ||| |||| ||||||||||| | |||||||||| |||||    
T  44156 ggtctgttcttgggctagtcactgtatttttgattcatatccttcttctattg 44104  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 27443205 - 27443257
Alignment:
Q  136 ggtctgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    ||||||||||||| ||| |||| ||||||||||| | |||||||||| |||||    
T  27443205 ggtctgttcttgggctagtcactgtatttttgattcatatccttcttctattg 27443257  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 34104376 - 34104328
Alignment:
Q  140 tgttcttggactactcaccgtatttttgatacttatccttcttgtattg 188  Q
    ||||||||| ||| ||||||||||||| || ||||||||||| ||||||    
T  34104376 tgttcttgggctagtcaccgtattttttattcttatccttctcgtattg 34104328  T

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