View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6555_high_13 (Length: 302)

Name: NF6555_high_13
Description: NF6555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6555_high_13
NF6555_high_13
[»] chr7 (8 HSPs)
chr7 (1-272)||(39787890-39788151)
chr7 (68-227)||(28848667-28848826)
chr7 (68-268)||(43546517-43546717)
chr7 (68-214)||(25008208-25008354)
chr7 (68-214)||(28849765-28849911)
chr7 (68-272)||(25009272-25009476)
chr7 (68-227)||(43545455-43545614)
chr7 (68-257)||(11669924-11670112)
[»] chr1 (9 HSPs)
chr1 (3-271)||(31027293-31027569)
chr1 (68-273)||(31028448-31028653)
chr1 (68-273)||(31035418-31035623)
chr1 (1-235)||(31034237-31034473)
chr1 (68-272)||(46652568-46652772)
chr1 (68-272)||(46651429-46651633)
chr1 (68-257)||(50315401-50315589)
chr1 (203-258)||(52896195-52896250)
chr1 (68-107)||(46604670-46604709)
[»] chr5 (5 HSPs)
chr5 (68-272)||(42775488-42775692)
chr5 (172-272)||(33737738-33737838)
chr5 (68-273)||(37986286-37986491)
chr5 (94-272)||(42776631-42776809)
chr5 (34-111)||(33737963-33738040)
[»] scaffold0018 (1 HSPs)
scaffold0018 (68-272)||(193659-193863)
[»] scaffold0472 (2 HSPs)
scaffold0472 (68-272)||(10233-10437)
scaffold0472 (68-272)||(9088-9292)
[»] chr4 (7 HSPs)
chr4 (68-272)||(39929141-39929345)
chr4 (68-227)||(39928046-39928205)
chr4 (93-214)||(46253101-46253222)
chr4 (34-111)||(33607696-33607773)
chr4 (68-135)||(5236440-5236507)
chr4 (92-135)||(5236898-5236941)
chr4 (34-112)||(13506952-13507030)
[»] chr2 (5 HSPs)
chr2 (68-272)||(20588246-20588450)
chr2 (68-272)||(20587107-20587311)
chr2 (172-257)||(44095438-44095523)
chr2 (184-257)||(44097254-44097327)
chr2 (157-223)||(9662078-9662144)
[»] chr3 (8 HSPs)
chr3 (68-272)||(45981475-45981679)
chr3 (68-272)||(8392590-8392794)
chr3 (92-214)||(8391517-8391639)
chr3 (68-214)||(45982596-45982742)
chr3 (68-257)||(41881441-41881629)
chr3 (203-273)||(46725192-46725262)
chr3 (68-134)||(31199452-31199518)
chr3 (187-257)||(44458678-44458748)
[»] chr8 (4 HSPs)
chr8 (68-272)||(35506717-35506919)
chr8 (68-272)||(35505590-35505794)
chr8 (172-271)||(35750188-35750287)
chr8 (68-214)||(35750656-35750801)
[»] scaffold0524 (2 HSPs)
scaffold0524 (68-272)||(8856-9060)
scaffold0524 (68-135)||(7883-7950)
[»] scaffold0369 (1 HSPs)
scaffold0369 (68-214)||(8066-8213)
[»] scaffold0280 (1 HSPs)
scaffold0280 (175-257)||(12215-12297)
[»] chr6 (1 HSPs)
chr6 (203-271)||(31994753-31994821)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 39787890 - 39788151
Alignment:
Q  1 aaacagagggatgaagaagatgaatctcttgtctttaaatttcaaatttacatgtttacgnnnnnnnaatttcatccctgtgcacatttacgtttttggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  39787890 aaacagagggatgaagaagatgaatctcttgtctttaaatttcaaatttacatgtttacgtttttttaatttcatccctgtgcacatttacgtttttggt 39787989  T
Q  101 tttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcacacttcgccacgtgcgactccgtttgccatcaaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||     
T  39787990 tttggtccctccattctaaccacttgtcatctctcgatatacataagtttgattttgccaactcacacttcgccacgtgcgactccatttgccatcaaat 39788089  T
Q  201 cgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattttgaaa 272  Q
    |||||||||||||||          |||||||||| | ||||||||||||||||||||||||||||||||||    
T  39788090 cgtttttgtaacgga----------agagactaaaagtaaaaggttaacaagttacaaagatgattttgaaa 39788151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 227
Target Start/End: Complemental strand, 28848826 - 28848667
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||| |||||||||||||||||||||| |||||||||||  |||||||||   | ||||||||    |||||||||||||||    
T  28848826 aatttcatccctctgcaattttgcgtttttggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcaca 28848727  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggag 227  Q
    ||||||| |||| | |||||| ||||| || | |||||||||||||| ||||||||||||    
T  28848726 cttcgccgcgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggag 28848667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 268
Target Start/End: Original strand, 43546517 - 43546717
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||| |||||||||||||||||||||| |||||||||||  |||||||||   | ||||||||    |||||||||||||||    
T  43546517 aatttcatccctctgcaattttgcgtttttggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaaacttttgccaactcaca 43546616  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattt 267  Q
    ||||||| |||| | |||||| ||||| || |  ||||||||||||| |||||||||||| ||| ||  ||||| || ||  || |||||| ||||||||    
T  43546617 cttcgccgcgtgtgtctccgtctgccaccacaatgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggatgattt 43546716  T
Q  268 t 268  Q
    |    
T  43546717 t 43546717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 25008354 - 25008208
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||| |||||||||||||||||||||| |||||||||||  |||||||||   | ||||||||    |||||||||||||||    
T  25008354 aatttcatccctctgcaattttgcgtttttggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcaca 25008255  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacgg 214  Q
    |||||||||||| | || ||| ||||| || | ||||||||||||||    
T  25008254 cttcgccacgtgtgtcttcgtctgccaccacaacgtttttgtaacgg 25008208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 28849765 - 28849911
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||| || ||||||||||||||||||| |||||||||||  |||||||||   | ||||||||    |||||||||||||||    
T  28849765 aatttcatccctctgcaattttgcgcttttggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcaca 28849864  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacgg 214  Q
    |||| ||||||| | |||||| ||||| || | ||||||||||||||    
T  28849865 cttcaccacgtgtgtctccgtctgccaccacaacgtttttgtaacgg 28849911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 272
Target Start/End: Original strand, 25009272 - 25009476
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||| || ||||||||||||||||||| ||||| ||| |  |||||||||   | ||||||||    |||||||||||||||    
T  25009272 aatttcatccctctgcaattttgcgcttttggttttggtccctcctttctagccattcatcatctctcctgacacataagcaagcttttgccaactcaca 25009371  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattt 267  Q
    |||| ||| ||| | |||||| ||||| || | |||||||||||||  |||||||||||| ||  ||  ||||| | ||  ||| |||||| ||||||||    
T  25009372 cttcaccatgtgtgtctccgtctgccaccacaacgtttttgtaacgagagttaacgggagggatgaattgcaaacgattggcaacttacaaggatgattt 25009471  T
Q  268 tgaaa 272  Q
    |||||    
T  25009472 tgaaa 25009476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 227
Target Start/End: Complemental strand, 43545614 - 43545455
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||| || ||||||||||| ||||||| ||||| |||||  |||||||||   | |||||||     |||||||||||||||    
T  43545614 aatttcatccctctgcaattttgcgcttttggttttgatccctcctttctagccactcatcatctctcttgacacataaggaagcttttgccaactcaca 43545515  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggag 227  Q
    |||| |||| || | |||||| ||||| || | |||||||||||||| ||||||||||||    
T  43545514 cttcaccacatgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggag 43545455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 257
Target Start/End: Complemental strand, 11670112 - 11669924
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||| | ||||||||||||||||||| | ||||  ||||| |||||| ||  || |||||||| |  ||||||||  |||      
T  11670112 aatttcatccctctgcaattttgcatttttggttttggtccctcaaatctagtcacttatcatctgtcagtacacataagcgtg-ttttgccatgtcatc 11670014  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttaca 257  Q
      | |||||||| |||||| ||||||| |||  |||||||||||||||||||||||  || |||||||  |||||||||||||| |||||    
T  11670013 gattgccacgtgtgactccatttgccaacaatgcgtttttgtaacggaagttaacgttagggactaaaatcaaaaggttaacaacttaca 11669924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 3 - 271
Target Start/End: Complemental strand, 31027569 - 31027293
Alignment:
Q  3 acagagggatgaagaagatgaa-tctcttgtctttaaatttcaaa-tttacatgtttacgnnnnnnnaatttcatccctgtgcacatttacgtttttggt 100  Q
    |||||||||||||||||||||| |||||||| |||| |||||||| |||  |||||||||       |||||||||| ||||||||||||||||||||||    
T  31027569 acagagggatgaagaagatgaaatctcttgtttttagatttcaaaattttgatgtttacggttttttaatttcatccatgtgcacatttacgtttttggt 31027470  T
Q  101 tttggt------ccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcacacttcgccacgtgcgactccgtttgcca 194  Q
    ||||||      ||||||||||||  ||||||||||||||  ||| ||||||||||  |||||||||||||||  ||||||| || |||||| ||||| |    
T  31027469 tttggttttggtccctccattctaggcacttgtcatctcttaatacacataagcttgtttttgccaactcacatctcgccacctgtgactccatttgcta 31027370  T
Q  195 tcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattttgaa 271  Q
    ||||| | ||||| |||| |||||||||||||| ||||||| ||||| |||||||||||| ||| |||| |||||||    
T  31027369 tcaaagcatttttttaacagaagttaacgggagtgactaaaagcaaacggttaacaagttgcaatgatggttttgaa 31027293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 68 - 273
Target Start/End: Original strand, 31028448 - 31028653
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||||||| | |||||||||||||||| ||| || || |||| ||||||||||   || |||||||| |  |||| ||||||||||    
T  31028448 aatttcatccctctgcacatttgcatttttggttttggtccatccgttttagccacgtgtcatctctaagtacacataagcctgtttttaccaactcaca 31028547  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattt 267  Q
     ||| ||||||||| ||| ||||| || |||| | |||||||||||||||||||| |||| || |||| ||||| |||||||||||||||| |||| |||    
T  31028548 tttcaccacgtgcggctctgtttgtcaacaaagcatttttgtaacggaagttaaccggagggattaaaagcaaacggttaacaagttacaaggatggttt 31028647  T
Q  268 tgaaaa 273  Q
    ||||||    
T  31028648 tgaaaa 31028653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 68 - 273
Target Start/End: Original strand, 31035418 - 31035623
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||||||| | |||||||||||||||| ||| || || |||| ||||||||||   || |||||||| |  |||| ||||||||||    
T  31035418 aatttcatccctctgcacatttgcatttttggttttggtccatccgttttagccacgtgtcatctctaagtacacataagcctgtttttaccaactcaca 31035517  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattt 267  Q
     ||| ||||||||| ||| ||||| || |||| | |||||||||||||||||||| |||| || |||| ||||| |||||||||||||||| |||| |||    
T  31035518 tttcaccacgtgcggctctgtttgtcaacaaagcatttttgtaacggaagttaaccggagggattaaaagcaaacggttaacaagttacaaggatggttt 31035617  T
Q  268 tgaaaa 273  Q
    ||||||    
T  31035618 tgaaaa 31035623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 31034473 - 31034237
Alignment:
Q  1 aaacagagggatgaagaagatgaa-tctcttgtctttaaatttcaaa-tttacatgtttacgnnnnnnnaatttcatccctgtgcacatttacgtttttg 98  Q
    ||||||| |||||||||||||||| |||||||| |||| |||||||| |||  |||||||||       |||||||||| | ||||||||||||||||||    
T  31034473 aaacagacggatgaagaagatgaaatctcttgtttttagatttcaaaattttgatgtttacggttttttaatttcatccttctgcacatttacgtttttg 31034374  T
Q  99 gttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcacacttcgccacgtgcgactccgtttgccatcaa 198  Q
    |||||||||||||||||||| | |||||||||||||   || |||||||| |  |||||||||||||||  |||| |  || |||||| ||||  |||||    
T  31034373 gttttggtccctccattctagcgacttgtcatctcttagtacacataagcctgtttttgccaactcacatctcgcaaactgtgactccatttgttatcaa 31034274  T
Q  199 accgtttttgtaacggaagttaacgggagagactaaa 235  Q
    | | |||||||||| ||||||| |||||| |||||||    
T  31034273 agcatttttgtaacagaagttagcgggagtgactaaa 31034237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 68 - 272
Target Start/End: Original strand, 46652568 - 46652772
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||| |||||||||||||||||||||| |||||||||||  |||||||||   | ||||||||    |||||||||||||||    
T  46652568 aatttcatccctctgcaattttgcgtttttggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcaca 46652667  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattt 267  Q
    ||||||| |||| | |||||| ||||| || | |||||||||||||| |||||||||||| ||| ||  ||||| || ||  || |||||| ||||||||    
T  46652668 cttcgccgcgtgtgtctccgtctgccaccataacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggatgattt 46652767  T
Q  268 tgaaa 272  Q
    |||||    
T  46652768 tgaaa 46652772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 272
Target Start/End: Complemental strand, 46651633 - 46651429
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||| || ||||||||||||||||||| ||||| |||||  |||||||||   | ||||||||    |||||||||||||||    
T  46651633 aatttcatccctctgcaattttgcgcttttggttttggtccctcctttctagccactcatcatctctcttgacacataagcaagcttttgccaactcaca 46651534  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattt 267  Q
    |||| ||||||| | |||||| ||||| || | |||||||||||||| |||||||||||| ||  ||  ||||| | ||  ||| |||||| ||||||||    
T  46651533 cttcaccacgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggatgaattgcaaacgattggcaacttacaaggatgattt 46651434  T
Q  268 tgaaa 272  Q
    |||||    
T  46651433 tgaaa 46651429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 68 - 257
Target Start/End: Complemental strand, 50315589 - 50315401
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||| ||||||||||||||||||||| | ||||| ||||| |||||| ||  || ||||||| | | ||||||||  |||      
T  50315589 aatttcatccctctgcaattttgcgtttttggttttggtccctcaaatctaatcacttatcatctgtcagtacacataag-tgtgttttgccatgtcatc 50315491  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttaca 257  Q
      | |||||||| |||||| ||||||| |||  |||||||||||||||||||||||  || |||||||  |||||||||||||| |||||    
T  50315490 gattgccacgtgtgactccatttgccaacaatgcgtttttgtaacggaagttaacgttagggactaaaaccaaaaggttaacaacttaca 50315401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 52896250 - 52896195
Alignment:
Q  203 tttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaa 258  Q
    |||||| ||| ||||||||||| || ||||||||||||| ||||||||||||||||    
T  52896250 tttttgcaacagaagttaacggaagggactaaaggcaaagggttaacaagttacaa 52896195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 46604709 - 46604670
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtc 107  Q
    |||||||||||| ||||| |||||||||||||||||||||    
T  46604709 aatttcatccctttgcacttttacgtttttggttttggtc 46604670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 68 - 272
Target Start/End: Complemental strand, 42775692 - 42775488
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||| |||||||||||||||||||||| |||||||||||  |||||||||   | ||||||||    |||||||||||||||    
T  42775692 aatttcatccctctgcaattttgcgtttttggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcaca 42775593  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattt 267  Q
    ||||||| |||| | |||||| ||||| || | |||||||||||||| |||||||||||| ||| ||  ||||| || ||  || |||||| ||||||||    
T  42775592 cttcgccgcgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggatgattt 42775493  T
Q  268 tgaaa 272  Q
    |||||    
T  42775492 tgaaa 42775488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 172 - 272
Target Start/End: Complemental strand, 33737838 - 33737738
Alignment:
Q  172 gccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattttgaa 271  Q
    ||||| || ||||| |||||||| |||| |||||||||||| ||||| || ||||| ||||||| |||||||||||||||||||||| | || |||||||    
T  33737838 gccacatgtgactctgtttgccagcaaagcgtttttgtaacagaagtcaatgggagggactaaaagcaaaaggttaacaagttacaagggtggttttgaa 33737739  T
Q  272 a 272  Q
    |    
T  33737738 a 33737738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 273
Target Start/End: Original strand, 37986286 - 37986491
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||| ||||| ||||  ||| ||||||||||| |||||||||| ||||| |||||  |||||||||   | | |||||| |  ||||| ||||||||     
T  37986286 aatttcttccctatgcaatttttcgtttttggttctggtccctcctttctagccactcatcatctctcttgacatataagcctgtttttgtcaactcacc 37986385  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattt 267  Q
    |||||||| ||| | ||| || ||||| || | |||||||||| ||| ||||||  |||| |||| |  |||||  |||||||| |||||| |||| |||    
T  37986386 cttcgccatgtgtgtctctgtctgccaccacaacgtttttgtagcgggagttaagtggagggactgattgcaaacagttaacaacttacaatgatggttt 37986485  T
Q  268 tgaaaa 273  Q
     |||||    
T  37986486 agaaaa 37986491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 272
Target Start/End: Original strand, 42776631 - 42776809
Alignment:
Q  94 ttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcacacttcgccacgtgcgactccgtttgcc 193  Q
    |||||||||||||| |||| ||||| |||||  |||||||||   | ||||||||    ||||||||||||| ||||| ||| ||  | ||||||  |||    
T  42776631 ttttggttttggtctctcctttctagccactcatcatctctcttgacacataagcaagcttttgccaactcagacttcaccatgtatgtctccgtccgcc 42776730  T
Q  194 atcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattttgaaa 272  Q
    | || | |||||||||||| | |||||||||||| ||  ||  ||||| | ||  ||| |||||| |||||||||||||    
T  42776731 accacaacgtttttgtaacaggagttaacgggagggatgaattgcaaacgattggcaacttacaaggatgattttgaaa 42776809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 33738040 - 33737963
Alignment:
Q  34 tttaaatttcaaatttacatgtttacgnnnnnnnaatttcatccctgtgcacatttacgtttttggttttggtccctc 111  Q
    ||||||||||||||||  |||||||||       |||||||||||| ||||  ||| |||| ||||||||||||||||    
T  33738040 tttaaatttcaaattttaatgtttacgttttctcaatttcatccctttgcaattttgcgttattggttttggtccctc 33737963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 68 - 272
Target Start/End: Complemental strand, 193863 - 193659
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||| |||||||||||||||||||||| |||||||||||  ||||| |||   | ||||||||    |||||||||||||||    
T  193863 aatttcatccctctgcaattttgcgtttttggttttggtccctcctttctaaccactcatcatcgctcttgacacataagcaagcttttgccaactcaca 193764  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattt 267  Q
    ||||||| |||| | |||||| ||||| || | |||||||||||||| |||||||||||| ||| ||  ||||| || ||  || |||||| ||||||||    
T  193763 cttcgccgcgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctattaacttacaaggatgattt 193664  T
Q  268 tgaaa 272  Q
    |||||    
T  193663 tgaaa 193659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 272
Target Start/End: Original strand, 10233 - 10437
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||| ||| ||||  ||| |||||||||||||||||||||| |||||||||||  |||||||||   | ||||||||    ||||| |||||||||    
T  10233 aatttcattcctctgcaattttgcgtttttggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgtcaactcaca 10332  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattt 267  Q
    |||||||||||| | |||||| ||||| || | |||||||||||||| |||||||||||| ||| ||  ||||| || ||  || ||| || ||||||||    
T  10333 cttcgccacgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttataaggatgattt 10432  T
Q  268 tgaaa 272  Q
    |||||    
T  10433 tgaaa 10437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 272
Target Start/End: Complemental strand, 9292 - 9088
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||| || |||||||||||||| |||| ||||| ||| |  |||||||||   | ||||||||    |||||||||||||||    
T  9292 aatttcatccctatgcaattttgcgcttttggttttggtctctcctttctagccattcatcatctctcttgacacataagcaagcttttgccaactcaca 9193  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattt 267  Q
    |||| ||||||| | ||| || ||||| || | |||||||||||||| |||||||||||| ||| ||  ||||| | ||  ||| |||||| ||||||||    
T  9192 cttcaccacgtgtgtctctgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacgattggcaacttacaaggatgattt 9093  T
Q  268 tgaaa 272  Q
    |||||    
T  9092 tgaaa 9088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 272
Target Start/End: Original strand, 39929141 - 39929345
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    ||||||||||||  |||  ||| |||||||||||||| ||||||| |||||||||||  |||||||||   | ||||||||    |||||||||||||||    
T  39929141 aatttcatccctcagcaattttgcgtttttggttttgatccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcaca 39929240  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattt 267  Q
    ||||||| |||| | |||||| ||||| || | |||||||||||||| |||||||||||| ||| ||  ||||| || ||  || |||||| ||||||||    
T  39929241 cttcgccgcgtgtgtctccgtctgccaccataacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggatgattt 39929340  T
Q  268 tgaaa 272  Q
    |||||    
T  39929341 tgaaa 39929345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 227
Target Start/End: Complemental strand, 39928205 - 39928046
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||| || ||||||||||| ||||||| ||||| ||||   |||||||||   | ||||||||    |||||||||||||||    
T  39928205 aatttcatccctctgcaattttgcgcttttggttttgatccctcctttctagccacgcatcatctctcttgacacataagcaagcttttgccaactcaca 39928106  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggag 227  Q
    |||| |||| || | |||||| ||||| || | |||||||||||||| ||||||||||||    
T  39928105 cttcaccacatgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggag 39928046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 46253222 - 46253101
Alignment:
Q  93 tttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcacacttcgccacgtgcgactccgtttgc 192  Q
    |||||||||||| ||||||| |||||||||||  |||||||||   | ||||||||    |||||||||||||||||||||| |||| | |||||| |||    
T  46253222 tttttggttttgatccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttcgccgcgtgtgtctccgtctgc 46253123  T
Q  193 catcaaaccgtttttgtaacgg 214  Q
    || || | | ||||||||||||    
T  46253122 caccacaacatttttgtaacgg 46253101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 33607773 - 33607696
Alignment:
Q  34 tttaaatttcaaatttacatgtttacgnnnnnnnaatttcatccctgtgcacatttacgtttttggttttggtccctc 111  Q
    ||||||||| ||||||  |||||||||       |||||||||||| ||||  |||||||||||||||||||||||||    
T  33607773 tttaaattttaaatttttatgtttacgttttttcaatttcatccctctgcaattttacgtttttggttttggtccctc 33607696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 5236507 - 5236440
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctc 135  Q
    |||||||||||| ||||  ||| |||||||||| ||||||||||| ||||| |||||  |||||||||    
T  5236507 aatttcatccctttgcaattttgcgtttttggtcttggtccctcctttctagccactcatcatctctc 5236440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 135
Target Start/End: Original strand, 5236898 - 5236941
Alignment:
Q  92 gtttttggttttggtccctccattctaaccacttgtcatctctc 135  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||    
T  5236898 gtttttggttttggtccctcctttctagccactcgtcatctctc 5236941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 13507030 - 13506952
Alignment:
Q  34 tttaaatttcaaatttacatgtttacgnnnnnnnaatttcatccctgtgcacatttacgtttttggttttggtccctcc 112  Q
    ||||||||||||||||  |||||||||       |||||||||||| ||||| |||  ||||||| |||||||||||||    
T  13507030 tttaaatttcaaattttgatgtttacgagtttttaatttcatccctatgcacttttgtgtttttgtttttggtccctcc 13506952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 272
Target Start/End: Original strand, 20588246 - 20588450
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||| || ||||||||||||||||||| ||||| |||||  |||||||||   | ||||||||    |||||||||||||||    
T  20588246 aatttcatccctctgcaattttgcgcttttggttttggtccctcctttctagccactcatcatctctcttgacacataagcaagcttttgccaactcaca 20588345  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattt 267  Q
    |||| ||||||| | || ||| ||||| || | |||||||||||||| |||||||||||| ||| ||  ||||| | ||  ||| |||||| ||||||||    
T  20588346 cttcaccacgtgtgtctacgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacgattggcaacttacaaggatgattt 20588445  T
Q  268 tgaaa 272  Q
    |||||    
T  20588446 tgaaa 20588450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 68 - 272
Target Start/End: Complemental strand, 20587311 - 20587107
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    ||||||||| || ||||  ||| |||| |||||||| |||||||| |||||||||||  |||||||||   | ||||||||    |||||||||||||||    
T  20587311 aatttcatctctctgcaattttgcgttattggtttttgtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcaca 20587212  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattt 267  Q
    ||||||| |||| | |||||| ||||| || | |||||||||||||| ||||||| |||| ||| ||  ||||| || ||  || |||||| ||||||||    
T  20587211 cttcgccgcgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacaggagggacgaattgcaaacggctagtaacttacaaggatgattt 20587112  T
Q  268 tgaaa 272  Q
    |||||    
T  20587111 tgaaa 20587107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 257
Target Start/End: Complemental strand, 44095523 - 44095438
Alignment:
Q  172 gccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttaca 257  Q
    |||||||| |||||| ||||||| |||| |||||||||||||||||||||||  || |||||||  |||||||||||||| |||||    
T  44095523 gccacgtgtgactccatttgccaacaaagcgtttttgtaacggaagttaacgttagggactaaaaccaaaaggttaacaacttaca 44095438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 44097254 - 44097327
Alignment:
Q  184 tccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttaca 257  Q
    ||||||||||| |||  |||||||||||| ||||||||||  || |||||||  |||||||||||||| |||||    
T  44097254 tccgtttgccaacaacgcgtttttgtaacagaagttaacgttagggactaaaaccaaaaggttaacaacttaca 44097327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 9662078 - 9662144
Alignment:
Q  157 gccaactcacacttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacg 223  Q
    |||||||||  |||||||||||| | |||||||||||| |||  ||||||| |||| ||||||||||    
T  9662078 gccaactcagccttcgccacgtgtgtctccgtttgccagcaacacgtttttttaacagaagttaacg 9662144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 68 - 272
Target Start/End: Complemental strand, 45981679 - 45981475
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||| |||||||| ||| || |||||| |||||||||||  |||||||||   | ||||||||    |||||||||||||||    
T  45981679 aatttcatccctctgcaattttgcgtttttgatttcggaccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcaca 45981580  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattt 267  Q
    ||||||| |||| | |||||| ||| | || | |||||||||||||| |||||||||||| ||| ||  ||||| || ||  || |||||| ||||||||    
T  45981579 cttcgccgcgtgtgtctccgtctgcaaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggatgattt 45981480  T
Q  268 tgaaa 272  Q
    |||||    
T  45981479 tgaaa 45981475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 272
Target Start/End: Original strand, 8392590 - 8392794
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||| || ||||||||||||||||||  ||||| |||||  |||||||||   | ||||||||    |||||||||||||||    
T  8392590 aatttcatccctctgcaattttgcgcttttggttttggtccctcttttctagccactcatcatctctcttgacacataagcaagcttttgccaactcaca 8392689  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattt 267  Q
    | || ||||||| | |||||| ||||| || | |||||||||||||| |||||||||||| ||  ||  ||||| | ||  ||| |||||| ||||||||    
T  8392690 cctcaccacgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggatgaattgcaaacgattggcaacttacaaggatgattt 8392789  T
Q  268 tgaaa 272  Q
    |||||    
T  8392790 tgaaa 8392794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 214
Target Start/End: Complemental strand, 8391639 - 8391517
Alignment:
Q  92 gtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcacacttcgccacgtgcgactccgtttg 191  Q
    ||||||||||||||||||||| |||||||||||  |||||||||   | ||||||||    ||||||||||||||||||||||  ||| | ||| || ||    
T  8391639 gtttttggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttcgccgtgtgtgtctcggtctg 8391540  T
Q  192 ccatcaaaccgtttttgtaacgg 214  Q
    ||| || | ||||||||||||||    
T  8391539 ccaccacaacgtttttgtaacgg 8391517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 45982596 - 45982742
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||| || ||||||||||||||||||  ||||| |||||  |||||||||   | ||||||||    |||||||||||||||    
T  45982596 aatttcatccctctgcaattttgcgcttttggttttggtccctcatttctagccactcatcatctctcttgacacataagcaagcttttgccaactcaca 45982695  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacgg 214  Q
    |||| ||||||  | |||||| ||||| || | ||||||||||||||    
T  45982696 cttcaccacgtatgtctccgtctgccaccacaacgtttttgtaacgg 45982742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 257
Target Start/End: Original strand, 41881441 - 41881629
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  |||  |||||||||||||||||||| | ||||  ||||| |||||| ||  || |||||||| |  ||||||||  |||      
T  41881441 aatttcatccctctgcaattttgtgtttttggttttggtccctcaaatctagtcacttatcatctgtcagtacacataagcgtg-ttttgccatgtcatc 41881539  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttaca 257  Q
      | |||||||| |||||| ||||| | |||  |||||||||||||||||||||||  || |||||||  |||||||||||||| |||||    
T  41881540 gattgccacgtgtgactccatttgcaaacaatgcgtttttgtaacggaagttaacgttagggactaaaaccaaaaggttaacaacttaca 41881629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 46725192 - 46725262
Alignment:
Q  203 tttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattttgaaaa 273  Q
    |||||||||||| |||||||||||||||||||  ||| | |||||| || ||| |||||||||||||||||    
T  46725192 tttttgtaacgggagttaacgggagagactaattgcagacggttaataacttataaagatgattttgaaaa 46725262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 31199518 - 31199452
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctct 134  Q
    |||||||||||||||   ||||||||||||| |||| ||||||  |||||||| |||| ||||||||    
T  31199518 aatttcatccctgtgtcaatttacgtttttgattttagtccctgtattctaacaacttatcatctct 31199452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 44458748 - 44458678
Alignment:
Q  187 gtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttaca 257  Q
    |||||||| |||  |||||||||||||||||||||||  || |||||||   ||||||||||||| |||||    
T  44458748 gtttgccagcaacgcgtttttgtaacggaagttaacgttagggactaaaattaaaaggttaacaacttaca 44458678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 68 - 272
Target Start/End: Original strand, 35506717 - 35506919
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||| |||||| |  |||||||||||| |||||||||||  |||||||||   | ||||||||    |||||||||||||||    
T  35506717 aatttcatccctctgcaattttgcgttttgg--tttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcaca 35506814  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattt 267  Q
    |||||||  ||| | |||||| ||||| || | |||||||||||||| |||||||||||| ||| ||  ||||| || ||  || |||||| ||||||||    
T  35506815 cttcgccgtgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggatgattt 35506914  T
Q  268 tgaaa 272  Q
    |||||    
T  35506915 tgaaa 35506919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 272
Target Start/End: Complemental strand, 35505794 - 35505590
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||| || |||||||||| ||| |||| ||||| |||||  ||||||||    | |||||||     |||||||||||||||    
T  35505794 aatttcatccctttgcaattttgcgcttttggtttttgtctctcctttctagccactcatcatctcttttgaaacataagaaagcttttgccaactcaca 35505695  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattt 267  Q
    |||| ||||||  | |||||| ||||| || | | |||||||| ||| |||||||||||| ||| ||  ||||| | ||  ||| |||||| ||||||||    
T  35505694 cttcaccacgtctgtctccgtctgccaccacaacatttttgtagcgggagttaacgggagggacgaattgcaaacgattggcaacttacaaggatgattt 35505595  T
Q  268 tgaaa 272  Q
    |||||    
T  35505594 tgaaa 35505590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 35750287 - 35750188
Alignment:
Q  172 gccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattttgaa 271  Q
    |||||||| | ||| || ||||| || | ||||||||||| || | |||||||||||||||||  ||||| ||||||||| |||| | |||| |||||||    
T  35750287 gccacgtgtgtctctgtctgccaccacaacgtttttgtaatgggaattaacgggagagactaattgcaaacggttaacaacttacgaggatggttttgaa 35750188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 35750656 - 35750801
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||||| ||||||||||| |||||||| || || |||||  | | |||||   | |||||||| |  ||| ||||||||||     
T  35750656 aatttcatccctctgcaattttacatttttggttttcgtccctcctttttagccactcattagctctcttgacacataagcatgcttt-gccaactcacc 35750754  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacgg 214  Q
     ||||||||||| | |||||| ||||| || | ||||||||||||||    
T  35750755 attcgccacgtgtgtctccgtctgccaccacaacgtttttgtaacgg 35750801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 272
Target Start/End: Original strand, 8856 - 9060
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagctttattttgccaactcaca 167  Q
    |||||||||||| ||||  ||| || ||||||||||||||||||| ||||| |||||  |||||||||   | ||||||      |||||||||||||||    
T  8856 aatttcatccctctgcaattttgcggttttggttttggtccctcctttctagccactcatcatctctcttgacacataacaaagcttttgccaactcaca 8955  T
Q  168 cttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattt 267  Q
    |||| ||||||| | |||||| | ||| || | |||||||||||||| |||||||||||| ||| ||  ||||| | ||  ||| |||||| |||||||     
T  8956 cttcaccacgtgtgtctccgtctaccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacgattggcaacttacaaggatgattc 9055  T
Q  268 tgaaa 272  Q
    |||||    
T  9056 tgaaa 9060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 7950 - 7883
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctc 135  Q
    |||||||||||| ||||  ||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  7950 aatttcatccctctgcaattttgcgtttttggttttggtccctcctttctaaccactcatcatctctc 7883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 8066 - 8213
Alignment:
Q  68 aatttcatccctgtgcacatttacgtttttggttttggtccctccattctaaccacttgtcatctctcgatatacataagc-tttattttgccaactcac 166  Q
    |||||||||||| ||||  ||| || ||||||||||||||||||| ||||| |||||  |||||||||   | ||||||||     |||| |||||||||    
T  8066 aatttcatccctctgcaattttgcgcttttggttttggtccctcctttctagccactcatcatctctcttgacacataagcaagcttttttccaactcac 8165  T
Q  167 acttcgccacgtgcgactccgtttgccatcaaaccgtttttgtaacgg 214  Q
    ||||| ||||||| | ||| || ||||| || | ||||||||||||||    
T  8166 acttcaccacgtgtgtctctgtctgccaccacaacgtttttgtaacgg 8213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 257
Target Start/End: Complemental strand, 12297 - 12215
Alignment:
Q  175 acgtgcgactccgtttgccatcaaaccgtttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttaca 257  Q
    ||||| ||||| |||||| | |||| ||||||||| || ||||||||||  || |||||||  |||||||||||||| |||||    
T  12297 acgtgtgactctgtttgctagcaaagcgtttttgtcacagaagttaacgttagggactaaaaccaaaaggttaacaacttaca 12215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 31994821 - 31994753
Alignment:
Q  203 tttttgtaacggaagttaacgggagagactaaaggcaaaaggttaacaagttacaaagatgattttgaa 271  Q
    ||||||||||||  ||||||||||| ||||||  ||||| ||||||||| ||| || |||| |||||||    
T  31994821 tttttgtaacgggtgttaacgggagggactaattgcaaatggttaacaacttataaggatggttttgaa 31994753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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