View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6555_high_6 (Length: 446)
Name: NF6555_high_6
Description: NF6555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6555_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 59 - 445
Target Start/End: Complemental strand, 2656086 - 2655703
Alignment:
| Q |
59 |
tccatactcctgttggtaagtcttttatgaaaagatcatctggtgatatggattctgttacaaatggaagtggcgaggttggacaagcatctctcacaca |
158 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2656086 |
tccatactcctgttggtaagtcttctatgaaaagatcatccggtgatatggattctgttacaaatggaagtggcgaggttggacaagcatctgtcacaca |
2655987 |
T |
|
| Q |
159 |
gccgtcgaagatggtgcatgcgcgtgaaaattgaacccaaagattaaagctgacgtaataatcgttgacgaggatcatctgtttgatgnnnnnnnaatga |
258 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
2655986 |
gccgtcaaagatggtgct----cgtgaaaattgaacccaaagattaaagctgacgtaataatcgttgacgaggatcatatgtttgatgtttttttaatga |
2655891 |
T |
|
| Q |
259 |
tgttacctctttgtctacattttctttgtcgttaaaaatcagatggcagattatgttctgttcatctattatgcaattagtcatttgatttcaagacttt |
358 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2655890 |
tgttacctgtttatctacattttctttgtcgttaataatcagatggcagattatgttctgttcatctattatacaattagtcatttgatttcaagacttt |
2655791 |
T |
|
| Q |
359 |
g-nnnnnnncaattgctatttcctataatctaatattacgaatccataataaaagtcattgacatgttttcgtattattttccttcgc |
445 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2655790 |
gtttttcttcaattgctatttgctataatctaatattacgaatccataataaaagtcattgacatgttttcgtattattttccttcgc |
2655703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2656122 - 2656085
Alignment:
| Q |
1 |
catattttgcagcagcaggttggagaatgtggtgattc |
38 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2656122 |
catattttgcagcagcaggttgtagaatgtggtgattc |
2656085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 47764633 - 47764474
Alignment:
| Q |
16 |
caggttggagaatgtggtgattcgtgcagcgacacaaacatggtccatactcctgttggtaagtcttttatgaaaagatcatctggtgatatggattctg |
115 |
Q |
| |
|
||||||| ||||||||| |||||||| |||||||||||||| ||||| ||||||||||| || |||| ||||||||||||||| ||| |||| |||||| |
|
|
| T |
47764633 |
caggttgtagaatgtggcgattcgtgtagcgacacaaacattgtccacactcctgttggcaaatcttctatgaaaagatcatccggtaatatagattctt |
47764534 |
T |
|
| Q |
116 |
ttacaaatggaagtggcgaggttggacaagcatctctcacacagccgtcgaagatggtgc |
175 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||| | |||||||| ||||||||||||| |
|
|
| T |
47764533 |
caacgaatggaaatggcgaggttggacaagcatctgtgacacagccctcgaagatggtgc |
47764474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University