View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6555_high_7 (Length: 413)
Name: NF6555_high_7
Description: NF6555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6555_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 6 - 397
Target Start/End: Complemental strand, 44621044 - 44620657
Alignment:
| Q |
6 |
agtgagatgaaaataataagaatctattagaccacccacaacaagatatcatgattccataagcatcaatatctagttgatactcatattgtggagaaaa |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
44621044 |
agtgaaatgaaaataataagaatctattagaccacccacaacaagatatcatgactccataagcatcaatatctagctaatactcatattgtggagaaaa |
44620945 |
T |
|
| Q |
106 |
gatgggtatacaatgagaacaatgtctcaaatacgtgctctcactgtttaagggtctcactcattttaaagattataatattgaaatataacgatacaaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
44620944 |
gatgggtatacaatgagaacaatgtctcaaatacgtaccctcactatttaagggtctcactcattttaaagattataatattaaaatataacgatataaa |
44620845 |
T |
|
| Q |
206 |
gtaaagttattaatagaccccatttgaaaaatttatgtaacatgttgggttcaataannnnnnnctgagaggtgttgggttcaataaattaaatgcttat |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44620844 |
gtaaagttattaatagaccccatttgaaaaatttatgtaacatgttgggttcaataatttatttttgagaggtgttgggttcaataaattaaatgcttat |
44620745 |
T |
|
| Q |
306 |
tagatagatactaatactaacaaattataaataaataaaatatgcacgtaacaaagtagttttctccattgcgaatgatctgatcttggttg |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44620744 |
----tagatactaatactaacaaattataaataaataaaatatgcacgtaacaaagtagttttctccattgcgaatgatctgatcttggttg |
44620657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University