View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6555_low_10 (Length: 346)
Name: NF6555_low_10
Description: NF6555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6555_low_10 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 104 - 346
Target Start/End: Original strand, 30300182 - 30300432
Alignment:
| Q |
104 |
aacaacaacaaagacaacctcatcctccaacgcttccaccacaaagtctggctaacctcaaaagaagcaacaacc------------ctaacaaatccat |
191 |
Q |
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|||||||||||||| |||||||| |||||||| ||||||||||||| |||| ||||||||||||||||||||||| |||||||| |||| |
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| T |
30300182 |
aacaacaacaaagataacctcattctccaacgtttccaccacaaagactggttaacctcaaaagaagcaacaaccttaacaaactctctaacaaacccat |
30300281 |
T |
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| Q |
192 |
ctctctcctttataaccatcttccatctctactcttcccgcaaagactataacccaactcaaccctttctgtctctccctcatcacccaattcacccaat |
291 |
Q |
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| T |
30300282 |
ctctctcctt---aacaatcttccatctctactcttctcgcaaagactacaacccaactcaacc-tttctgtatctccctcatcaccaaattcactcaat |
30300377 |
T |
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| Q |
292 |
cccacaacttcacctacattgacatctttcttaaaaccctccctaacccctactc |
346 |
Q |
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||||||| |||||||||||||||| | ||||||||||||||||||| |||||||| |
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| T |
30300378 |
cccacaatttcacctacattgacacccttcttaaaaccctccctaaaccctactc |
30300432 |
T |
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Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 8445043 - 8445143
Alignment:
| Q |
234 |
aagactataacccaactcaaccctttctgtctctccctcatcacccaattcacccaatcccacaacttcacctacattgacatctttcttaaaaccctcc |
333 |
Q |
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| T |
8445043 |
aagactataacccaacccaaccctt-ctgtctctccctcgtcaccaaattcacccaatcccacaacttcacctacattgacacctttcttaaaaccctcc |
8445141 |
T |
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| Q |
334 |
ct |
335 |
Q |
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|| |
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| T |
8445142 |
ct |
8445143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 64567 - 64496
Alignment:
| Q |
234 |
aagactataacccaactcaaccctttctgtctctccctcatcacccaattcacccaatcccacaacttcacct |
306 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
64567 |
aagactataacccaactcaaccctt-ctgtctctccctcttcaccaaattcacccaatcccacaacttcacct |
64496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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