View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6555_low_11 (Length: 328)

Name: NF6555_low_11
Description: NF6555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6555_low_11
NF6555_low_11
[»] chr7 (3 HSPs)
chr7 (1-120)||(12808313-12808432)
chr7 (251-328)||(12808565-12808642)
chr7 (251-328)||(37433365-37433442)
[»] chr6 (3 HSPs)
chr6 (1-120)||(2634152-2634271)
chr6 (251-328)||(2633942-2634019)
chr6 (251-328)||(12083762-12083839)
[»] scaffold0103 (2 HSPs)
scaffold0103 (1-120)||(5738-5857)
scaffold0103 (251-328)||(5990-6067)
[»] chr8 (4 HSPs)
chr8 (6-110)||(4638118-4638222)
chr8 (253-328)||(27261278-27261353)
chr8 (289-328)||(32447464-32447503)
chr8 (253-296)||(4637951-4637994)
[»] chr5 (2 HSPs)
chr5 (251-328)||(21838094-21838171)
chr5 (251-328)||(4807050-4807127)
[»] chr4 (1 HSPs)
chr4 (264-308)||(27896807-27896851)


Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 12808313 - 12808432
Alignment:
Q  1 tgttgtttttggtttgtactgattatgtttctcatcttcttctgcaggtttcttggttgtcaagcataagggtttgtgattcttggagttgatgttgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12808313 tgttgtttttggtttgtactgattatgtttctcatcttcttctgcaggtttcttggttgtcaagcataagggtttgtgattcttggagttgatgttgttt 12808412  T
Q  101 atggcaattacttcttgata 120  Q
    ||||||||||||||||||||    
T  12808413 atggcaattacttcttgata 12808432  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 12808565 - 12808642
Alignment:
Q  251 agacaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataagccatttgaat 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12808565 agacaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataagccatttgaat 12808642  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 37433442 - 37433365
Alignment:
Q  251 agacaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataagccatttgaat 328  Q
    |||||||||||| ||||||||||||| | |||||| |||||||||||||||||||||| |||||||||||||||||||    
T  37433442 agacaattgcaagatgttgagacaaaagtaataagttgtgattaagttgcaaataaacggattataagccatttgaat 37433365  T

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Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 2634271 - 2634152
Alignment:
Q  1 tgttgtttttggtttgtactgattatgtttctcatcttcttctgcaggtttcttggttgtcaagcataagggtttgtgattcttggagttgatgttgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2634271 tgttgtttttggtttgtactgattatgtttctcatcttcttctgcaggtttcttggttgtcaagcataagggtttgtgattcttggagttgatgttgttt 2634172  T
Q  101 atggcaattacttcttgata 120  Q
    ||||||||||||||||||||    
T  2634171 atggcaattacttcttgata 2634152  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 2634019 - 2633942
Alignment:
Q  251 agacaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataagccatttgaat 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2634019 agacaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataagccatttgaat 2633942  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 12083839 - 12083762
Alignment:
Q  251 agacaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataagccatttgaat 328  Q
    |||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12083839 agacaattgcaagatgttgagacaaaagtaataagctgtgattaagttgcaaataaacaaattataagccatttgaat 12083762  T

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Target: scaffold0103 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 5738 - 5857
Alignment:
Q  1 tgttgtttttggtttgtactgattatgtttctcatcttcttctgcaggtttcttggttgtcaagcataagggtttgtgattcttggagttgatgttgttt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5738 tgttgtttttggtttgtactgattatgtttctcaacttcttctgcaggtttcttggttgtcaagcataagggtttgtgattcttggagttgatgttgttt 5837  T
Q  101 atggcaattacttcttgata 120  Q
    ||||||||||||||||||||    
T  5838 atggcaattacttcttgata 5857  T

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Target: scaffold0103; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 5990 - 6067
Alignment:
Q  251 agacaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataagccatttgaat 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5990 agacaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataagccatttgaat 6067  T

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Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 4638222 - 4638118
Alignment:
Q  6 tttttggtttgtactgattatgtttctcatcttcttctgcaggtttcttggttgtcaagcataagggtttgtgattcttggagttgatgttgtttatggc 105  Q
    |||| ||||||| |||| ||||||| | ||||||||||||||||||||||||  |||||||||||| ||||||||||| ||||||| || |||||||| |    
T  4638222 ttttgggtttgtgctgagtatgttttttatcttcttctgcaggtttcttggtcatcaagcataaggttttgtgattctgggagttggtgctgtttatgtc 4638123  T
Q  106 aatta 110  Q
    |||||    
T  4638122 aatta 4638118  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 253 - 328
Target Start/End: Complemental strand, 27261353 - 27261278
Alignment:
Q  253 acaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataagccatttgaat 328  Q
    |||||||||| ||||| | ||||| | ||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  27261353 acaattgcaagatgtttacacaaaagtaataagctgtggttaagttgcaaataaacggattataagccatttgaat 27261278  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 328
Target Start/End: Complemental strand, 32447503 - 32447464
Alignment:
Q  289 tgattaagttgcaaataaacagattataagccatttgaat 328  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  32447503 tgattaagttgcaaataaacggattataagccatttgaat 32447464  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 4637994 - 4637951
Alignment:
Q  253 acaattgcaaaatgttgagacaaatgcaataagctgtgattaag 296  Q
    ||||||||||||| |||||||||| |||||||| ||||||||||    
T  4637994 acaattgcaaaatcttgagacaaaagcaataagttgtgattaag 4637951  T

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Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 21838094 - 21838171
Alignment:
Q  251 agacaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataagccatttgaat 328  Q
    |||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  21838094 agacaattgcaatatgttgacacaaaagtaataagctgtgattaagttgcaaataaacggattataagtcatttgaat 21838171  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 4807127 - 4807050
Alignment:
Q  251 agacaattgcaaaatgttgagacaaatgcaataagctgtgattaagttgcaaataaacagattataagccatttgaat 328  Q
    |||||||||||| ||||||| ||||| | |||||| |||||| ||||||||||||||| |||||||||||||||||||    
T  4807127 agacaattgcaatatgttgacacaaaagtaataagttgtgatcaagttgcaaataaacggattataagccatttgaat 4807050  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 27896851 - 27896807
Alignment:
Q  264 atgttgagacaaatgcaataagctgtgattaagttgcaaataaac 308  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  27896851 atgttgagacaaaagtaataagctgtgattaagttgcaaataaac 27896807  T

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