View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6555_low_14 (Length: 303)
Name: NF6555_low_14
Description: NF6555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6555_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 19292640 - 19292364
Alignment:
| Q |
19 |
gatgagaaactatactaggatttcttgaaatatgccttagggaggggttgaaattgatgcatatttcaagaacattttagagaaatttagaatatatagc |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19292640 |
gatgagaaactatactaggatttcttggaatatgccttagggaggggttgaaattgatgcatatttcaagaacattttagagaaatttagaata----gc |
19292545 |
T |
|
| Q |
119 |
ctaaagttgctacatatatttgtgtattgttctgctaaaaccaagattagcttataggctaaaaacatccatcataatttaaacttgaaaagccaaacaa |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19292544 |
ctaaagttgctacatat--ttgtgtattgttctgctaaaaccaagattagcttatagcctaaaaacatccatcacaatttaaacttgaaaagccaaacaa |
19292447 |
T |
|
| Q |
219 |
aaatctaaataagtccacttctagaagcaactttagaaacctataaatagacaaacatgtgtgcaattgtattcaagcctttg |
301 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19292446 |
aaatctagataaatccacttctagaagcaactttagaaacctataaatagacaaacatgtgtgcaattgtattcaaacctttg |
19292364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 33798907 - 33798865
Alignment:
| Q |
259 |
ctataaatagacaaacatgtgtgcaattgtattcaagcctttg |
301 |
Q |
| |
|
||||||||||| || ||| |||||||||||||||||||||||| |
|
|
| T |
33798907 |
ctataaatagataagcatatgtgcaattgtattcaagcctttg |
33798865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 300
Target Start/End: Original strand, 28787993 - 28788036
Alignment:
| Q |
257 |
acctataaatagacaaacatgtgtgcaattgtattcaagccttt |
300 |
Q |
| |
|
||||||||||||||| | ||| |||||||||||||||||||||| |
|
|
| T |
28787993 |
acctataaatagacatatatgggtgcaattgtattcaagccttt |
28788036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University