View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6555_low_17 (Length: 300)
Name: NF6555_low_17
Description: NF6555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6555_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 24095062 - 24094803
Alignment:
| Q |
16 |
tcacttttaatcctagaacataacttcaaccagttcacctagcacacaatcagtaattttcaatattttagcttataactatgttttaaaaaccaaacca |
115 |
Q |
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| T |
24095062 |
tcacttttaatcctagaacataacttcaaccagttcacctagcacacaatcagtcattttcaatattttagcttataactatgttttaaaaaccaaacca |
24094963 |
T |
|
| Q |
116 |
gacagttcaattagttgaaccatgaactgatattctcaaacggttggttatttaagtgttttgattgcggtttcatcgtagtttgagaggtttaaagcag |
215 |
Q |
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| T |
24094962 |
gacagttcaattagttgaaccatgaactgatactctcaaacggttggttatttaagcgttttgattgcggtttcgtcctagtttgagaggtttaaagcag |
24094863 |
T |
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| Q |
216 |
ttgaaccatgatccagagctctcgccggttcgatgttacagttcaatttttaaaacattg |
275 |
Q |
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| T |
24094862 |
ttgaaccatgatccagagctctcgccggttcgatgttacagttcaatttttaaaacattg |
24094803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 29416677 - 29416607
Alignment:
| Q |
204 |
ggtttaaagcagttgaaccatgatccagagctctcgccggttcgatgttacagttcaatttttaaaacattg |
275 |
Q |
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| T |
29416677 |
ggtttagagcagttggaccatgactcagaggtctcgccagttcgatgt-acagttcaacttttaaaacattg |
29416607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 19674089 - 19674036
Alignment:
| Q |
175 |
tttgattgcggtttcatcgtagtttgagaggtttaaagcagttgaaccatgatc |
228 |
Q |
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| T |
19674089 |
tttgattgcggtttcgttttggtttgagtggtttaaagcagttgaaccatgatc |
19674036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 8087899 - 8087941
Alignment:
| Q |
184 |
ggtttcatcgtagtttgagaggtttaaagcagttgaaccatga |
226 |
Q |
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| T |
8087899 |
ggtttcatcctagtttgagcggtttaaagcagttgagccatga |
8087941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 29295106 - 29295073
Alignment:
| Q |
111 |
aaccagacagttcaattagttgaaccatgaactg |
144 |
Q |
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| T |
29295106 |
aaccagacagttcaattggttgaaccatgaactg |
29295073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 1918373 - 1918444
Alignment:
| Q |
206 |
tttaaagcagttgaaccatgatccagagctctcgccggttcgatgttacagttcaatttttaaaacattgatt |
278 |
Q |
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| T |
1918373 |
tttaaaacagataaaccatgatctggaggtctcgccggttcgatg-tcctattcaatttttaaaacattgatt |
1918444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 31386759 - 31386804
Alignment:
| Q |
97 |
tgttttaaaaaccaaaccagacagttcaattagttgaaccatgaac |
142 |
Q |
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| T |
31386759 |
tgttttaaaaagcaaaccggacagttcaatcggttgaaccatgaac |
31386804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 43977380 - 43977313
Alignment:
| Q |
206 |
tttaaagcagttgaaccatgatccagagctctcgccggttcgatgttacagttcaatttttaaaacatt |
274 |
Q |
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|||||| |||||||||||||||||| | ||| |||||| ||||| | |||||||||||||||||||| |
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| T |
43977380 |
tttaaaccagttgaaccatgatccaaaagtctgaccggtttgatgtca-agttcaatttttaaaacatt |
43977313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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