View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6555_low_18 (Length: 299)
Name: NF6555_low_18
Description: NF6555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6555_low_18 |
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| [»] scaffold0103 (2 HSPs) |
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Alignment Details
Target: scaffold0103 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 5374 - 5328
Alignment:
| Q |
231 |
ctaagaacaatgaaccggacacagaaaggtatggtgagaggaaaggg |
277 |
Q |
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| T |
5374 |
ctaagaacaatgaaccggacacagaaaggtatggtgagaggaaaggg |
5328 |
T |
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Target: scaffold0103; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 5470 - 5432
Alignment:
| Q |
135 |
ctttatgcttgatggcaaagaaacctgaagaagaagatg |
173 |
Q |
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| T |
5470 |
ctttatgcttgatggcaaagaaacctgaagaagaagatg |
5432 |
T |
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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 12807949 - 12807903
Alignment:
| Q |
231 |
ctaagaacaatgaaccggacacagaaaggtatggtgagaggaaaggg |
277 |
Q |
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| T |
12807949 |
ctaagaacaatgaaccggacacagaaaggtatggtgagaggaaaggg |
12807903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 12808045 - 12808007
Alignment:
| Q |
135 |
ctttatgcttgatggcaaagaaacctgaagaagaagatg |
173 |
Q |
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| T |
12808045 |
ctttatgcttgatggcaaagaaacctgaagaagaagatg |
12808007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 2634635 - 2634681
Alignment:
| Q |
231 |
ctaagaacaatgaaccggacacagaaaggtatggtgagaggaaaggg |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2634635 |
ctaagaacaatgaaccggacacagaaaggtatggtgagaggaaaggg |
2634681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 2634539 - 2634577
Alignment:
| Q |
135 |
ctttatgcttgatggcaaagaaacctgaagaagaagatg |
173 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
2634539 |
ctttatgcttgatggcaaagaaacctgaagaagaagatg |
2634577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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