View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6555_low_19 (Length: 292)

Name: NF6555_low_19
Description: NF6555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6555_low_19
NF6555_low_19
[»] chr4 (2 HSPs)
chr4 (15-276)||(21835434-21835693)
chr4 (181-221)||(27112157-27112197)
[»] chr5 (3 HSPs)
chr5 (30-113)||(28524455-28524538)
chr5 (181-222)||(26718885-26718926)
chr5 (181-222)||(26988629-26988670)
[»] chr6 (1 HSPs)
chr6 (181-221)||(2477525-2477565)
[»] chr1 (1 HSPs)
chr1 (181-221)||(6221810-6221850)
[»] chr3 (1 HSPs)
chr3 (40-137)||(13472757-13472851)
[»] chr2 (3 HSPs)
chr2 (181-216)||(11952534-11952569)
chr2 (181-235)||(37182766-37182820)
chr2 (181-222)||(12694801-12694842)
[»] chr8 (1 HSPs)
chr8 (181-242)||(39332327-39332388)


Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 15 - 276
Target Start/End: Complemental strand, 21835693 - 21835434
Alignment:
Q  15 tttcttggatctcctcctgtagcatacacaaaatgaatcaacaatgaaaatttctcattttttaaatgtcactcaattaattgtgaagcccacacccaac 114  Q
    |||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21835693 tttcctggatctcctcctgtag--tacacaaaatgaatcaacaatgaaaatttctcattttttaaatgtcactcaattaattgtgaagcccacacccaac 21835596  T
Q  115 taacaatcacaactgcaaaaatatagatccagcggctagatactaccagaactttgggctagatccttttattacgggtctcttttcactttcagaaccg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21835595 taacaatcacaactgcaaaaatatagatccagcggctagatactaccagaactttgggctagatccttttattacgggtctcttttcactttcagaaccg 21835496  T
Q  215 agtctccgaaaacttaggaacagccctgctattcatatatacctaaataaatgtgttattaa 276  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21835495 agtctccgaaaacttaggaacggccctgctattcatatatacctaaataaatgtgttattaa 21835434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 27112157 - 27112197
Alignment:
Q  181 ttttattacgggtctcttttcactttcagaaccgagtctcc 221  Q
    ||||||||||||||||||||||||| |||||||||| ||||    
T  27112157 ttttattacgggtctcttttcacttacagaaccgagcctcc 27112197  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 28524455 - 28524538
Alignment:
Q  30 cctgtagcatacacaaaatgaatcaacaatgaaaatttctcattttttaaatgtcactcaattaattgtgaagcccacacccaa 113  Q
    |||||||||||||||||||||||||| ||||  |||||| ||||||| ||||||||||||| | ||||||||| |||| |||||    
T  28524455 cctgtagcatacacaaaatgaatcaataatgttaatttcccatttttcaaatgtcactcaaatgattgtgaagtccacgcccaa 28524538  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 26718926 - 26718885
Alignment:
Q  181 ttttattacgggtctcttttcactttcagaaccgagtctccg 222  Q
    ||||||||||||||||||||||||| |||||||||| |||||    
T  26718926 ttttattacgggtctcttttcacttacagaaccgagcctccg 26718885  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 26988670 - 26988629
Alignment:
Q  181 ttttattacgggtctcttttcactttcagaaccgagtctccg 222  Q
    ||||||||||||||||||||||||| |||||||||| |||||    
T  26988670 ttttattacgggtctcttttcacttacagaaccgagcctccg 26988629  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 2477565 - 2477525
Alignment:
Q  181 ttttattacgggtctcttttcactttcagaaccgagtctcc 221  Q
    ||||||||||||||||||||||||| |||||||||| ||||    
T  2477565 ttttattacgggtctcttttcacttacagaaccgagcctcc 2477525  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 6221810 - 6221850
Alignment:
Q  181 ttttattacgggtctcttttcactttcagaaccgagtctcc 221  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  6221810 ttttattacgggtctcttttcatttacagaaccgagtctcc 6221850  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 13472851 - 13472757
Alignment:
Q  40 acacaaaatgaatcaacaatgaaaatttctcattttttaaatgtcactcaattaattgtgaagcccacacccaactaacaatcacaactgcaaaaata 137  Q
    |||||||||||||||||  ||| |||||  | ||||| ||||||| ||| ||| ||||||||||| |||||||| |   |||||||| ||||||||||    
T  13472851 acacaaaatgaatcaaccgtgataatttgccgtttttcaaatgtcgctcgattgattgtgaagccaacacccaatt---aatcacaattgcaaaaata 13472757  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 11952569 - 11952534
Alignment:
Q  181 ttttattacgggtctcttttcactttcagaaccgag 216  Q
    ||||||||||||||||||||||||| ||||||||||    
T  11952569 ttttattacgggtctcttttcacttacagaaccgag 11952534  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 37182766 - 37182820
Alignment:
Q  181 ttttattacgggtctcttttcactttcagaaccgagtctccgaaaacttaggaac 235  Q
    ||||||||||||||||||||||||| |||| ||||| ||||| |  |||||||||    
T  37182766 ttttattacgggtctcttttcacttacagagccgagcctccggattcttaggaac 37182820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 12694801 - 12694842
Alignment:
Q  181 ttttattacgggtctcttttcactttcagaaccgagtctccg 222  Q
    ||||||||||||||||||||||||| |||| ||||| |||||    
T  12694801 ttttattacgggtctcttttcacttacagagccgagcctccg 12694842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 39332388 - 39332327
Alignment:
Q  181 ttttattacgggtctcttttcactttcagaaccgagtctccgaaaacttaggaacagccctg 242  Q
    |||||||||| |||||||||||| | |||||||||| |||||||  | ||||||| ||||||    
T  39332388 ttttattacgagtctcttttcacctacagaaccgagcctccgaattcgtaggaacggccctg 39332327  T

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