View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6555_low_23 (Length: 254)

Name: NF6555_low_23
Description: NF6555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6555_low_23
NF6555_low_23
[»] chr6 (3 HSPs)
chr6 (13-243)||(15572323-15572548)
chr6 (195-244)||(20528167-20528216)
chr6 (193-244)||(3005228-3005279)
[»] chr8 (2 HSPs)
chr8 (193-244)||(22835959-22836010)
chr8 (195-244)||(3887727-3887776)
[»] chr7 (3 HSPs)
chr7 (193-244)||(5780485-5780536)
chr7 (195-244)||(7108109-7108158)
chr7 (128-244)||(47241419-47241531)
[»] chr3 (2 HSPs)
chr3 (193-244)||(30058329-30058380)
chr3 (193-244)||(29401058-29401109)
[»] chr5 (1 HSPs)
chr5 (193-244)||(11399907-11399958)


Alignment Details
Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 15572323 - 15572548
Alignment:
Q  13 cacaagagaggagttatatggagatgatttcatcaaacaaataaggtgattaattagcaaagtagaaannnnnnnnnnnnnnnaaatgttgatgtataac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||| ||||||||||||    
T  15572323 cacaagagaggagttatatggagatgatttcatcaaacaaataaggtgattaattagcaaagtagaaa-aaacaatatttttaaaattttgatgtataac 15572421  T
Q  113 attgggcacgttaggaaaaaataagagtgcttatacacggacacgcataggtggcatacatacacctcttaaannnnnnnacataaatgtaacatgtggc 212  Q
    ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||    |||||||| ||||||       ||||||||| || |||||||    
T  15572422 attgggcacgttaggaaaaaataggagtgcttatacacagacacgtataggtgg----catacaccccttaaacccccacacataaatgcaagatgtggc 15572517  T
Q  213 aatgcgggtccaaaatgactacatatccttt 243  Q
    |||| ||||||||||||||||||||||||||    
T  15572518 aatgtgggtccaaaatgactacatatccttt 15572548  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 20528216 - 20528167
Alignment:
Q  195 ataaatgtaacatgtggcaatgcgggtccaaaatgactacatatcctttg 244  Q
    |||||||||||||||||||||| ||||||||||| ||||| |||||||||    
T  20528216 ataaatgtaacatgtggcaatgtgggtccaaaataactacttatcctttg 20528167  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 3005228 - 3005279
Alignment:
Q  193 acataaatgtaacatgtggcaatgcgggtccaaaatgactacatatcctttg 244  Q
    ||||||||| ||||||||| |||| ||||||||||| |||||||||| ||||    
T  3005228 acataaatgcaacatgtggaaatgtgggtccaaaataactacatatcatttg 3005279  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 22835959 - 22836010
Alignment:
Q  193 acataaatgtaacatgtggcaatgcgggtccaaaatgactacatatcctttg 244  Q
    ||||||||| |||||||||||| | ||||||||||| |||||||||||||||    
T  22835959 acataaatgcaacatgtggcaaagtgggtccaaaataactacatatcctttg 22836010  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 3887727 - 3887776
Alignment:
Q  195 ataaatgtaacatgtggcaatgcgggtccaaaatgactacatatcctttg 244  Q
    ||||||| |||||||||||||| ||||||||||| ||||| |||| ||||    
T  3887727 ataaatgcaacatgtggcaatgtgggtccaaaataactacttatcatttg 3887776  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 5780485 - 5780536
Alignment:
Q  193 acataaatgtaacatgtggcaatgcgggtccaaaatgactacatatcctttg 244  Q
    |||||||||||||||||||||||  ||||||||||| |||| ||||||||||    
T  5780485 acataaatgtaacatgtggcaatatgggtccaaaataactatatatcctttg 5780536  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 7108109 - 7108158
Alignment:
Q  195 ataaatgtaacatgtggcaatgcgggtccaaaatgactacatatcctttg 244  Q
    ||||||| |||||||||||||| ||||||||||| ||||| |||||||||    
T  7108109 ataaatgcaacatgtggcaatgtgggtccaaaataactacttatcctttg 7108158  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 244
Target Start/End: Complemental strand, 47241531 - 47241419
Alignment:
Q  128 aaaaaataagagtgcttatacacggacacgcataggtggcatacatacacctcttaaannnnnnnacataaatgtaacatgtggcaatgcgggtccaaaa 227  Q
    |||||| || ||||||||||||  ||||| |||||||||||||||    | |||||||       | ||||||| |||||||||||||| ||||||||||    
T  47241531 aaaaaaaaaaagtgcttatacatagacacacataggtggcataca----cttcttaaaccctcacatataaatgcaacatgtggcaatgtgggtccaaaa 47241436  T
Q  228 tgactacatatcctttg 244  Q
    | ||||| |||| ||||    
T  47241435 taactacttatcatttg 47241419  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 30058380 - 30058329
Alignment:
Q  193 acataaatgtaacatgtggcaatgcgggtccaaaatgactacatatcctttg 244  Q
    ||||||||| | |||||||||||| ||||||||||| |||||||||||||||    
T  30058380 acataaatgcagcatgtggcaatgtgggtccaaaataactacatatcctttg 30058329  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 29401109 - 29401058
Alignment:
Q  193 acataaatgtaacatgtggcaatgcgggtccaaaatgactacatatcctttg 244  Q
    ||||||||| |||||||||||||  |||| |||||| |||||||||||||||    
T  29401109 acataaatgcaacatgtggcaatctgggttcaaaataactacatatcctttg 29401058  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 11399958 - 11399907
Alignment:
Q  193 acataaatgtaacatgtggcaatgcgggtccaaaatgactacatatcctttg 244  Q
    ||||||||| ||||| |||||||| |||| |||||| |||||||||||||||    
T  11399958 acataaatgcaacatatggcaatgtgggttcaaaataactacatatcctttg 11399907  T

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