View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6555_low_3 (Length: 562)
Name: NF6555_low_3
Description: NF6555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6555_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 16 - 551
Target Start/End: Original strand, 4982704 - 4983239
Alignment:
| Q |
16 |
atttcaagtttccacaatggtttcattctgatgtgaaaaggcttctttatagaatccttgatcctgatccaaaaacaagaattactattaacaagattat |
115 |
Q |
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| T |
4982704 |
atttcaagtttccacaatggtttcattctgatgtgaaaaggcttctttatagaatccttgatcctgatccaaaaacaagaattactattaacaagattat |
4982803 |
T |
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| Q |
116 |
gcaaaatagttggtttagaaaagggtataaacagattgaaggaccacatttatcgcctacacacggcgatatctcagatgttcataatgcatttgatgat |
215 |
Q |
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| T |
4982804 |
gcaaaatagttggtttagaaaagggtataaacagattgaaggaccacatttatcgcctacacacggcgatatctcagatgttcataatgcatttgatgat |
4982903 |
T |
|
| Q |
216 |
ttgtcaccactatcaagtccaatgtctgttaaagatgaacaatgtcctatgaaactatattgtttcaatgcatttgatatcatatcactctcttcgggac |
315 |
Q |
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| T |
4982904 |
ttgtcaacactatcaagtccaatgtctgttaaagatgaacaatgtcctatgaaactatattgtttcaatgcatttgatatcatatcactctcttcgggac |
4983003 |
T |
|
| Q |
316 |
ttgatctttcgggtttgtttgaaaaagatacgagtgaaggacaacatgcaagatttgctacaaatagaccaccttcaacaattgtgtcaaaacttgaaga |
415 |
Q |
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| T |
4983004 |
ttgatctttcgggtttgtttgaaaaagatacgagtgaaggacaacatgcaagatttgctacaaatagaccaccttcaacaattgtgtcaaaacttgaaga |
4983103 |
T |
|
| Q |
416 |
gacagcacaattagttggtagatttaaggtgatgaagcaaaatgggattgttagagtggagggatttgagacaggagtaagtgaacaactcaccattgat |
515 |
Q |
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| T |
4983104 |
gacagcacaattagttggtagatttaaggtgatgaagcaaaatgggattgttagagtggagggatttgagacaggagtaagtgaacaactcaccattgat |
4983203 |
T |
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| Q |
516 |
acagaaatttttgaagttgcatcttcattttatatt |
551 |
Q |
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| T |
4983204 |
acagaaatttttgaagttgcatcttcattttatatt |
4983239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 229 - 551
Target Start/End: Original strand, 4985303 - 4985628
Alignment:
| Q |
229 |
caagtccaatgtctgttaaagatgaacaatgtcctatgaaactatattgtttca---atgcatttgatatcatatcactctcttcgggacttgatctttc |
325 |
Q |
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|||||||||||||||||||||||||| |||| ||| ||| |||||| ||| || |||||||||| |||||||||||||| | ||| |||||||||| |
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| T |
4985303 |
caagtccaatgtctgttaaagatgaagaatgctctacgaagctatatcgttccattaatgcatttgaattcatatcactctctccaggaattgatctttc |
4985402 |
T |
|
| Q |
326 |
gggtttgtttgaaaaagatacgagtgaaggacaacatgcaagatttgctacaaatagaccaccttcaacaattgtgtcaaaacttgaagagacagcacaa |
425 |
Q |
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| T |
4985403 |
tcgtttgtttgagaaaggtatgagtaaaagacatcatgcaagattttctacaaaaagaccaccttcaaatgttgtgtcaaaacttgaagaaatagcacaa |
4985502 |
T |
|
| Q |
426 |
ttagttggtagatttaaggtgatgaagcaaaatgggattgttagagtggagggatttgagacaggagtaagtgaacaactcaccattgatacagaaattt |
525 |
Q |
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||| ||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||| | || ||||||||||| || |||| |||||||| |
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| T |
4985503 |
atagatggtagatttaaggttatgaagcaaaatgggattgttagattggagggaattgagacaaggatagttgaacaactcagtatagatatagaaattt |
4985602 |
T |
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| Q |
526 |
ttgaagttgcatcttcattttatatt |
551 |
Q |
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|||||||| ||||||||||||||||| |
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| T |
4985603 |
ttgaagttacatcttcattttatatt |
4985628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 3293620 - 3293588
Alignment:
| Q |
306 |
tcttcgggacttgatctttcgggtttgtttgaa |
338 |
Q |
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| T |
3293620 |
tcttcgggatttgatctttcgggtttgtttgaa |
3293588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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