View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6555_low_4 (Length: 508)
Name: NF6555_low_4
Description: NF6555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6555_low_4 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: scaffold0060 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 97 - 500
Target Start/End: Complemental strand, 63924 - 63523
Alignment:
| Q |
97 |
tttgatcgatttgaagagattttaggaggctaaaggggttgttgagaagatggttttgaaaggttttgtggtgagttatgattcttttaagggtttggtt |
196 |
Q |
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| T |
63924 |
tttgattgatttgaagagattttaggaggctaaaggggttgttgagaagatggttttgaaaggtttagtggtgagttatgattcttttaagggtttggtt |
63825 |
T |
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| Q |
197 |
gtggggttttgtagagaggggttggttgaggatgttgattggggtgttaggagtgtggttaggatggtgggatttgttgttaagatggggatgtggagac |
296 |
Q |
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| T |
63824 |
ttggggttttgtagagagggtttggttgaggatgttgattggggtgttaggagtatggttgggatggtgggatttgttgtta----ggggatgtggagtc |
63729 |
T |
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| Q |
297 |
aaattgttaagtttgttgttgtttctagtgatgtttgtgtttctcttgatacgattttggattgtcatgatgattgaaaaatatgatattggtgg---nn |
393 |
Q |
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| T |
63728 |
aaattgttaagtttg-tgttgtttctagtgatgtttgtgtttctcttgatacgattttggatggtcatgatgattgaaaaatatgatgttggtggttttt |
63630 |
T |
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| Q |
394 |
nnnnnnncaatgtacattattatatagccaataacatgttttgattaatttgattggaaggaaaaagaataattattcggctatatcgtaagtgtgatct |
493 |
Q |
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| T |
63629 |
tttttttcaatgtacattattatatagccaataacatgttttgattaatttgattggaaggaaaaagaataattattcggctatatcgtaagtgtgatct |
63530 |
T |
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| Q |
494 |
tcatttc |
500 |
Q |
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| T |
63529 |
tcatttc |
63523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 25 - 359
Target Start/End: Original strand, 30300928 - 30301259
Alignment:
| Q |
25 |
ggttttggaagatgtgatgatgaggaatgggtgttatcctcacgagagttcttatcaacatattttgtatgatttgatcgatttgaagagattttaggag |
124 |
Q |
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| T |
30300928 |
ggttttggaagatgtgatgatgaggaatgggtgttatcctaatgagagttcttatcagcatgtgttgtatggtttgattgatttgaagagatttgaggag |
30301027 |
T |
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| Q |
125 |
gctaaaggggttgttgagaagatggttttgaaaggttttgtggtgagttatgattcttttaagggtttggttgtggggttttgtagagaggggttggttg |
224 |
Q |
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| T |
30301028 |
gctaaaggggttgttgagaagatggttttgaagggttttgtggtgagttatgattcttttaagggtttggttttggggttttgtagagaagggttgattg |
30301127 |
T |
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| Q |
225 |
aggatgttgattggggtgttaggagtgtggttaggatggtgggatttgttgttaagatggggatgtggagacaaattgttaagtttgttgttgtttctag |
324 |
Q |
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| T |
30301128 |
aggaagttgattggggtgttaggagtatggttagga---tgggttttgttcctaggatggggatgtggagaccaattgttagatgtattgttgtttctag |
30301224 |
T |
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| Q |
325 |
tgatgtttgtgtttctcttgatacgattttggatt |
359 |
Q |
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| T |
30301225 |
agatgttagtgtttcttttgataagattttggatt |
30301259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 305 - 391
Target Start/End: Original strand, 30302187 - 30302273
Alignment:
| Q |
305 |
aagtttgttgttgtttctagtgatgtttgtgtttctcttgatacgattttggattgtcatgatgattgaaaaatatgatattggtgg |
391 |
Q |
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| T |
30302187 |
aagtgtgttgttgctgttagtgatgtttgtgtttctcttgatacgattttggatagtcatgatgattgaaaaatatgatgttggtgg |
30302273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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