View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6555_low_5 (Length: 493)
Name: NF6555_low_5
Description: NF6555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6555_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 201 - 485
Target Start/End: Complemental strand, 38009345 - 38009060
Alignment:
| Q |
201 |
aaccctagcaacacaactcaaagaaattga-tcccaagatgaataaactgaaaactgttttaattctcctatataattcttatacaatgaattttaacgt |
299 |
Q |
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|||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38009345 |
aaccctagcaacacaactcaaagaaattgagtaccaagatggataaactgaaaactgttttaattctcctatataattcttatacagtgaattttaacgt |
38009246 |
T |
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| Q |
300 |
tacaatcacttaataggacataaagcagaaaaccctaaaaaattacaaattttacccaacaaacccaaaacaatcaatatatgaattttcttccctacaa |
399 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38009245 |
tacaatcacttaataggacataaagcagaaacccctaaaaaattacaaattttacccaacaaacccaaaacaatcaatatatgaattttcttccctacaa |
38009146 |
T |
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| Q |
400 |
ttgctagtttagcaaattctttataaacaatgacacaaagtggagcagaattatgttgtggttgattatcttaattatttcttctc |
485 |
Q |
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| T |
38009145 |
ttgctagtgtagcaaattctttataaacaatgacacaaagtggagcagaattatgttgtggttgattatcttaattatttcttctc |
38009060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 38009479 - 38009444
Alignment:
| Q |
162 |
aagtatgtagaagtgagtaagatcactttctaacaa |
197 |
Q |
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| T |
38009479 |
aagtatgtagaagtgagtaagatcactttctaacaa |
38009444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 38011215 - 38011180
Alignment:
| Q |
15 |
caaatttttgccacactaaaattttgcggtaacttg |
50 |
Q |
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| T |
38011215 |
caaatttttgccacactaaaattttgcggtaacttg |
38011180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 346 - 451
Target Start/End: Complemental strand, 4276784 - 4276680
Alignment:
| Q |
346 |
aaattttacccaacaaacccaaaacaatcaatatatgaattttcttccctacaattgctagtttagcaaattctttataaacaatgacacaaagtggagc |
445 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| |
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| T |
4276784 |
aaattttacccaacaaacccaaaacaatcaatctatcaattttcttccctacaattgctagtgtagcaaattctttataaac-acgacacaaagtggagc |
4276686 |
T |
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| Q |
446 |
agaatt |
451 |
Q |
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|||||| |
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| T |
4276685 |
agaatt |
4276680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 346 - 456
Target Start/End: Complemental strand, 4234090 - 4233981
Alignment:
| Q |
346 |
aaattttacccaacaaacccaaaacaatcaatatatgaattttcttccctacaattgctagtttagcaaattctttataaacaatgacacaaagtggagc |
445 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| ||||||||||||||||||| | ||||||||||||||| |
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| T |
4234090 |
aaattttacccaacaaacccaaaacaatcaatctatcaattttctttcctacaattgctagtgtagcaaattctttataaac-acgacacaaagtggagc |
4233992 |
T |
|
| Q |
446 |
agaattatgtt |
456 |
Q |
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|||||| |||| |
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| T |
4233991 |
agaattgtgtt |
4233981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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