View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6555_low_6 (Length: 472)

Name: NF6555_low_6
Description: NF6555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6555_low_6
NF6555_low_6
[»] chr2 (5 HSPs)
chr2 (50-309)||(29542547-29542806)
chr2 (312-368)||(2742432-2742488)
chr2 (311-390)||(31330905-31330984)
chr2 (311-390)||(31337626-31337705)
chr2 (324-368)||(2696100-2696144)
[»] chr7 (5 HSPs)
chr7 (311-459)||(48479026-48479174)
chr7 (311-459)||(42784751-42784899)
chr7 (311-368)||(4342395-4342452)
chr7 (311-390)||(3077693-3077772)
chr7 (311-368)||(34455466-34455523)
[»] chr4 (3 HSPs)
chr4 (311-459)||(5600667-5600815)
chr4 (311-368)||(4853652-4853709)
chr4 (311-350)||(6734430-6734469)
[»] chr6 (4 HSPs)
chr6 (311-403)||(5248895-5248987)
chr6 (311-368)||(29933660-29933717)
chr6 (311-368)||(8520596-8520653)
chr6 (324-368)||(33295242-33295286)
[»] chr1 (2 HSPs)
chr1 (324-447)||(14113638-14113760)
chr1 (311-367)||(44192982-44193038)
[»] chr8 (1 HSPs)
chr8 (311-368)||(25637474-25637531)
[»] chr3 (2 HSPs)
chr3 (311-368)||(18112489-18112546)
chr3 (324-368)||(17054270-17054314)
[»] scaffold0643 (1 HSPs)
scaffold0643 (324-368)||(7370-7414)
[»] chr5 (2 HSPs)
chr5 (324-368)||(37367984-37368028)
chr5 (324-368)||(41529545-41529589)


Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-125; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 50 - 309
Target Start/End: Original strand, 29542547 - 29542806
Alignment:
Q  50 aaaatatgttggttgatagggcagcatgatcaagttcaaaacaacctcttgtatggccacaccttcctctagatttggtcagggatcttttacttctcga 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||| |||||||| |||||||||    
T  29542547 aaaatatgttggttgatagggcagcatgatcaagttcaaaacaacctcttgtatgaccacacattcctccagatttggtcaaggatctttgacttctcga 29542646  T
Q  150 cgaaggtctggatcaattttcatcacggattccaaatccggtactccgaatctttttaggatggagaacattgactcttttcactcttaattattaagat 249  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29542647 cgaaggtctggatccattttcatcacggattccaaatccggtactccgaaactttttaggatggagaacattgactcttttcactcttaattattaagat 29542746  T
Q  250 ttatttggtgctcataatatgagaaatattgatgaaattagagagttgaatatattaatg 309  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29542747 ttatttgatgctcataatatgagaaatattgatgaaattagagagttgaatatattaatg 29542806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 2742488 - 2742432
Alignment:
Q  312 cttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaa 368  Q
    ||||||||| | ||||||||||||||||||||||||||||  || ||||||||||||    
T  2742488 cttaactgacagcttatgccctctaaacaattcaatttctattctaattttccagaa 2742432  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 390
Target Start/End: Complemental strand, 31330984 - 31330905
Alignment:
Q  311 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacaca 390  Q
    |||||||||| | |||||| ||| |||||||||| |||||   ||||||||||||||| |||  ||||| ||||||||||    
T  31330984 gcttaactgacagcttatgacctttaaacaattccatttcaattcaaattttccagaatcaaagcaaacatgtttacaca 31330905  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 390
Target Start/End: Complemental strand, 31337705 - 31337626
Alignment:
Q  311 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacaca 390  Q
    |||||||||| | |||||| ||| |||||||||| |||||   ||||||||||||||| |||  ||||| ||||||||||    
T  31337705 gcttaactgacagcttatgacctttaaacaattccatttcaattcaaattttccagaatcaaagcaaacatgtttacaca 31337626  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 2696144 - 2696100
Alignment:
Q  324 cttatgccctctaaacaattcaatttctgctcaaattttccagaa 368  Q
    |||||| |||||| |||||||||||||  ||||||||||||||||    
T  2696144 cttatgacctctagacaattcaatttcaactcaaattttccagaa 2696100  T

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Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 311 - 459
Target Start/End: Original strand, 48479026 - 48479174
Alignment:
Q  311 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacacaccttctataccaaatatacg 410  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48479026 gcttaactgacaagttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacacaccttctataccaaatatacg 48479125  T
Q  411 agattccaacgtgctatactcagtgatcacttataatggcttatgagaa 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48479126 agattccaacgtgctatactcagtgatcacttataatggcttatgagaa 48479174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 311 - 459
Target Start/End: Complemental strand, 42784899 - 42784751
Alignment:
Q  311 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacacaccttctataccaaatatacg 410  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42784899 gcttaactgacaatttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacacaccttctataccaaatatacg 42784800  T
Q  411 agattccaacgtgctatactcagtgatcacttataatggcttatgagaa 459  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42784799 agattccaacgtgctatactcagtgatcacttataatggcttattagaa 42784751  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 311 - 368
Target Start/End: Original strand, 4342395 - 4342452
Alignment:
Q  311 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaa 368  Q
    |||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||    
T  4342395 gcttaactgacaacttataccctctaaacaattcaatttctgttcaaattttccagaa 4342452  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 390
Target Start/End: Complemental strand, 3077772 - 3077693
Alignment:
Q  311 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacaca 390  Q
    |||||||| | | ||||| |||||||||| |||||||||||| ||||||||||||||| |||  ||||| ||||||||||    
T  3077772 gcttaactaacagcttataccctctaaaccattcaatttctgttcaaattttccagaagcaaaccaaacatgtttacaca 3077693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 368
Target Start/End: Complemental strand, 34455523 - 34455466
Alignment:
Q  311 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaa 368  Q
    |||||||||| | |||||| |||||||||||||| |||||   |||||||||||||||    
T  34455523 gcttaactgacagcttatgacctctaaacaattccatttcaattcaaattttccagaa 34455466  T

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Target: chr4 (Bit Score: 141; Significance: 1e-73; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 311 - 459
Target Start/End: Original strand, 5600667 - 5600815
Alignment:
Q  311 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacacaccttctataccaaatatacg 410  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5600667 gcttaactgacaagttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacacaccttctataccaaatatacg 5600766  T
Q  411 agattccaacgtgctatactcagtgatcacttataatggcttatgagaa 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5600767 agattccaacgtgctatactcagtgatcacttataatggcttatgagaa 5600815  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 368
Target Start/End: Original strand, 4853652 - 4853709
Alignment:
Q  311 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaa 368  Q
    |||||||||| | ||||||||||||||||||||||||||||  || ||||||||||||    
T  4853652 gcttaactgacagcttatgccctctaaacaattcaatttctattctaattttccagaa 4853709  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 350
Target Start/End: Complemental strand, 6734469 - 6734430
Alignment:
Q  311 gcttaactgagaacttatgccctctaaacaattcaatttc 350  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  6734469 gcttaactgacaacttatgacctctaaacaattcaatttc 6734430  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 403
Target Start/End: Complemental strand, 5248987 - 5248895
Alignment:
Q  311 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacacaccttctataccaa 403  Q
    |||||||||| | |||||||||||||||||||||||||| |  | ||| ||||||||| |||  ||||| ||||||||||||||||| |||||    
T  5248987 gcttaactgacagcttatgccctctaaacaattcaatttttattaaaaatttccagaagcaacccaaacatgtttacacaccttctaaaccaa 5248895  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 311 - 368
Target Start/End: Complemental strand, 29933717 - 29933660
Alignment:
Q  311 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaa 368  Q
    |||||| ||| | ||||||||||||||||||||||||||||  || ||||||||||||    
T  29933717 gcttaattgacagcttatgccctctaaacaattcaatttctattctaattttccagaa 29933660  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 368
Target Start/End: Original strand, 8520596 - 8520653
Alignment:
Q  311 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaa 368  Q
    |||||||||| | |||||| |||||| |||||| ||||||  ||||||||||||||||    
T  8520596 gcttaactgacagcttatgacctctagacaattaaatttcaactcaaattttccagaa 8520653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 33295286 - 33295242
Alignment:
Q  324 cttatgccctctaaacaattcaatttctgctcaaattttccagaa 368  Q
    |||||| |||||| |||||||||||||  ||||||||||||||||    
T  33295286 cttatgacctctagacaattcaatttcaactcaaattttccagaa 33295242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 324 - 447
Target Start/End: Complemental strand, 14113760 - 14113638
Alignment:
Q  324 cttatgccctctaaacaattcaatttctgctcaaattttccagaaacaatacaaacgtgtttacacaccttctataccaaatatacgagattccaacgtg 423  Q
    ||||||||||||||||||||||||||||  ||||||||||||||| |||  ||||| ||| |||| | || ||| ||||  | ||||| |||||| ||||    
T  14113760 cttatgccctctaaacaattcaatttctattcaaattttccagaatcaaagcaaacatgtatacatatctccta-accatttctacgaaattccatcgtg 14113662  T
Q  424 ctatactcagtgatcacttataat 447  Q
    |||| |||| | ||||||||||||    
T  14113661 ctatgctcaataatcacttataat 14113638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 367
Target Start/End: Complemental strand, 44193038 - 44192982
Alignment:
Q  311 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccaga 367  Q
    |||||||| | |||||||| |||||||||| |||||||||   ||||||||||||||    
T  44193038 gcttaactaacaacttatgacctctaaacagttcaatttcaattcaaattttccaga 44192982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 368
Target Start/End: Complemental strand, 25637531 - 25637474
Alignment:
Q  311 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaa 368  Q
    |||||||||| ||||||| ||| ||||||||||||||||||| |||||||||||||||    
T  25637531 gcttaactgacaacttatacccactaaacaattcaatttctgttcaaattttccagaa 25637474  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 368
Target Start/End: Original strand, 18112489 - 18112546
Alignment:
Q  311 gcttaactgagaacttatgccctctaaacaattcaatttctgctcaaattttccagaa 368  Q
    |||||||||| | |||||| |||||||||||||| |||||   |||||||||||||||    
T  18112489 gcttaactgacagcttatgacctctaaacaattccatttcaattcaaattttccagaa 18112546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 17054314 - 17054270
Alignment:
Q  324 cttatgccctctaaacaattcaatttctgctcaaattttccagaa 368  Q
    |||||| |||||| |||||||||||||  ||||||||||||||||    
T  17054314 cttatgacctctagacaattcaatttcaactcaaattttccagaa 17054270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0643 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 7414 - 7370
Alignment:
Q  324 cttatgccctctaaacaattcaatttctgctcaaattttccagaa 368  Q
    |||||| |||||| |||||||||||||  ||||||||||||||||    
T  7414 cttatgacctctagacaattcaatttcaactcaaattttccagaa 7370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 37368028 - 37367984
Alignment:
Q  324 cttatgccctctaaacaattcaatttctgctcaaattttccagaa 368  Q
    |||||| |||||| |||||||||||||  ||||||||||||||||    
T  37368028 cttatgacctctagacaattcaatttcaactcaaattttccagaa 37367984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 41529545 - 41529589
Alignment:
Q  324 cttatgccctctaaacaattcaatttctgctcaaattttccagaa 368  Q
    |||||| |||||| |||||||||||||  ||||||||||||||||    
T  41529545 cttatgacctctagacaattcaatttcaactcaaattttccagaa 41529589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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