View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6555_low_9 (Length: 379)

Name: NF6555_low_9
Description: NF6555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6555_low_9
NF6555_low_9
[»] chr7 (11 HSPs)
chr7 (16-371)||(39592353-39592708)
chr7 (239-371)||(39345146-39345278)
chr7 (239-371)||(39333867-39333999)
chr7 (234-368)||(39625167-39625300)
chr7 (236-359)||(39359703-39359826)
chr7 (236-371)||(39551714-39551849)
chr7 (253-371)||(39578118-39578236)
chr7 (251-359)||(39542513-39542621)
chr7 (236-359)||(39568561-39568684)
chr7 (75-159)||(39625011-39625095)
chr7 (70-156)||(39577920-39578006)
[»] chr2 (3 HSPs)
chr2 (253-359)||(44237171-44237277)
chr2 (268-359)||(44214218-44214309)
chr2 (268-359)||(44226388-44226479)
[»] chr4 (3 HSPs)
chr4 (253-362)||(2901735-2901844)
chr4 (268-362)||(2872981-2873075)
chr4 (268-362)||(2883183-2883277)


Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 371
Target Start/End: Original strand, 39592353 - 39592708
Alignment:
Q  16 gtattagtaattctatagtaaatcgaaaacatgaaagtaatttgtgttacactctctcttaccttcataaatacatcgatatctggatcagggataatgt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39592353 gtattagtaattctatagtaaatcgaaaacatgaaagtaatttgtgttacactcgctcttaccttcataaatacatcgatatctggatcagggataatgt 39592452  T
Q  116 ttttctctttttctcttctacacacctctgctagcatatctacacaatagcaaagtcaaattttttcctttcaaatattactttgagatgaaataagtaa 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39592453 ttttctctttttctcttctacacacctctgctagcatatctacacaatagcaaagtcaaattttttcctttcaaatattactttgagaagaaataagtaa 39592552  T
Q  216 tgaaaaatgcaatggcgcatactaaccatattgatgcccaacgccttggactcttgcggagaaggccatggtttctctgacagtcaattctccaaggtga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39592553 tgaaaaatgcaatggcgcatactaaccatattgatgcccaacgccttggactcttgcggagaaggccatcgtttctctgacagtcaattctccaaggtga 39592652  T
Q  316 agatcattttgactgacataagcagcagttctttggggtacaaattctttcatctc 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39592653 agatcattttgactgacataagcagcagttctttggggtacaaattctttcatctc 39592708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 239 - 371
Target Start/End: Complemental strand, 39345278 - 39345146
Alignment:
Q  239 aaccatattgatgcccaacgccttggactcttgcggagaaggccatggtttctctgacagtcaattctccaaggtgaagatcattttgactgacataagc 338  Q
    ||||||||||| | ||||| |||||||||||||| ||||||||||  |||||||| |||||||||||||||| ||||||||||||||||   ||||||||    
T  39345278 aaccatattgaggtccaactccttggactcttgccgagaaggccaatgtttctctaacagtcaattctccaatgtgaagatcattttgatccacataagc 39345179  T
Q  339 agcagttctttggggtacaaattctttcatctc 371  Q
    ||||||||||||||| ||||||||  |||||||    
T  39345178 agcagttctttgggggacaaattcactcatctc 39345146  T

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Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 239 - 371
Target Start/End: Complemental strand, 39333999 - 39333867
Alignment:
Q  239 aaccatattgatgcccaacgccttggactcttgcggagaaggccatggtttctctgacagtcaattctccaaggtgaagatcattttgactgacataagc 338  Q
    ||||||||||| | ||||| |||||||||||||| ||||||||||  |||||||| |||||||||||||||| ||||||||||||||||   ||||| ||    
T  39333999 aaccatattgaggtccaactccttggactcttgccgagaaggccagtgtttctctaacagtcaattctccaatgtgaagatcattttgatccacatatgc 39333900  T
Q  339 agcagttctttggggtacaaattctttcatctc 371  Q
    ||||||||||||||| ||||||||  |||||||    
T  39333899 agcagttctttgggggacaaattcactcatctc 39333867  T

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Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 234 - 368
Target Start/End: Original strand, 39625167 - 39625300
Alignment:
Q  234 atactaaccatattgatgcccaacgccttggactcttgcggagaaggccatggtttctctgacagtcaattctccaaggtgaagatcattttgactgaca 333  Q
    ||||||||||||| || | ||||| ||||| |||||||| || ||||||| ||||||||||||||||||||| |||||||||  ||||||||||||||||    
T  39625167 atactaaccatatcgaggtccaactccttgaactcttgctgaaaaggccaaggtttctctgacagtcaattc-ccaaggtgagtatcattttgactgaca 39625265  T
Q  334 taagcagcagttctttggggtacaaattctttcat 368  Q
    ||||||||||||||||| || ||||| || |||||    
T  39625266 taagcagcagttctttgtggcacaaactcattcat 39625300  T

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Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 236 - 359
Target Start/End: Complemental strand, 39359826 - 39359703
Alignment:
Q  236 actaaccatattgatgcccaacgccttggactcttgcggagaaggccatggtttctctgacagtcaattctccaaggtgaagatcattttgactgacata 335  Q
    ||||||||||  || | ||||| ||||||||||| || |||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||   |||||    
T  39359826 actaaccataacgaggtccaactccttggactctagctgagaaggccaaggtttctctaacagtcatttctccaatgtgaagatcattttgatccacata 39359727  T
Q  336 agcagcagttctttggggtacaaa 359  Q
    ||||||||||||||||||||||||    
T  39359726 agcagcagttctttggggtacaaa 39359703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 236 - 371
Target Start/End: Original strand, 39551714 - 39551849
Alignment:
Q  236 actaaccatattgatgcccaacgccttggactcttgcggagaaggccatggtttctctgacagtcaattctccaaggtgaagatcattttgactgacata 335  Q
    ||||||||||  || ||||||| |||||||| ||||| ||||| |||| ||||||||| ||||||| |||||||| ||||||||||||||||   |||||    
T  39551714 actaaccataacgaggcccaactccttggacccttgctgagaaagccaaggtttctctaacagtcatttctccaatgtgaagatcattttgatccacata 39551813  T
Q  336 agcagcagttctttggggtacaaattctttcatctc 371  Q
    ||||||||||||||| || ||||| || ||||||||    
T  39551814 agcagcagttctttgaggcacaaactcattcatctc 39551849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 253 - 371
Target Start/End: Original strand, 39578118 - 39578236
Alignment:
Q  253 ccaacgccttggactcttgcggagaaggccatggtttctctgacagtcaattctccaaggtgaagatcattttgactgacataagcagcagttctttggg 352  Q
    ||||| ||||||| |||||| |||||  |||  |||||||| || ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |    
T  39578118 ccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatcgttttgactgacataagcagcagttctttgag 39578217  T
Q  353 gtacaaattctttcatctc 371  Q
    ||||||| || ||||||||    
T  39578218 gtacaaactcattcatctc 39578236  T

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Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 39542513 - 39542621
Alignment:
Q  251 gcccaacgccttggactcttgcggagaaggccatggtttctctgacagtcaattctccaaggtgaagatcattttgactgacataagcagcagttctttg 350  Q
    ||||||| |||||||| ||||| |||||||||| ||||||||| ||||||| |||||||| |||||| |||||||||   |||||||| |||||||||||    
T  39542513 gcccaactccttggacccttgccgagaaggccaaggtttctctaacagtcatttctccaatgtgaaggtcattttgatccacataagcggcagttctttg 39542612  T
Q  351 gggtacaaa 359  Q
    ||| |||||    
T  39542613 ggggacaaa 39542621  T

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Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 359
Target Start/End: Original strand, 39568561 - 39568684
Alignment:
Q  236 actaaccatattgatgcccaacgccttggactcttgcggagaaggccatggtttctctgacagtcaattctccaaggtgaagatcattttgactgacata 335  Q
    ||||||||||  || | ||||| |||||||||| ||| |||||||||| ||||||||| || |||| |||||||| ||||||||||||||||   |||||    
T  39568561 actaaccataacgaggtccaactccttggactcgtgctgagaaggccaaggtttctcttactgtcatttctccaatgtgaagatcattttgatccacata 39568660  T
Q  336 agcagcagttctttggggtacaaa 359  Q
     |||||||||| |||||| |||||    
T  39568661 tgcagcagttcgttgggggacaaa 39568684  T

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Target: chr7; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 39625011 - 39625095
Alignment:
Q  75 taccttcataaatacatcgatatctggatcagggataatgtttttctctttttctcttctacacacctctgctagcatatctaca 159  Q
    |||||||||| | ||||||||||| |||||||| |||||||||| |||  | |||||||||||||||||| ||||||||||||||    
T  39625011 taccttcatatagacatcgatatccggatcaggaataatgttttcctccatctctcttctacacacctcttctagcatatctaca 39625095  T

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Target: chr7; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 39577920 - 39578006
Alignment:
Q  70 tctcttaccttcataaatacatcgatatctggatcagggataatgtttttctctttttctcttctacacacctctgctagcatatct 156  Q
    |||||||| |||||||| ||||| ||||||||||| |||||||||||| |||| |||||||||||| | | |||| |||||||||||    
T  39577920 tctcttactttcataaacacatcaatatctggatctgggataatgtttctctccttttctcttctagatatctcttctagcatatct 39578006  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 359
Target Start/End: Original strand, 44237171 - 44237277
Alignment:
Q  253 ccaacgccttggactcttgcggagaaggccatggtttctctgacagtcaattctccaaggtgaagatcattttgactgacataagcagcagttctttggg 352  Q
    ||||| ||||||  |||||| ||||| |||| ||||||||| ||||||| ||||||||  |||| ||||| ||| |||| |||||| ||||||||||| |    
T  44237171 ccaactccttggcatcttgctgagaaagccaaggtttctctcacagtcatttctccaatatgaacatcatgttggctgatataagccgcagttctttgag 44237270  T
Q  353 gtacaaa 359  Q
    |||||||    
T  44237271 gtacaaa 44237277  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 359
Target Start/End: Original strand, 44214218 - 44214309
Alignment:
Q  268 cttgcggagaaggccatggtttctctgacagtcaattctccaaggtgaagatcattttgactgacataagcagcagttctttggggtacaaa 359  Q
    ||||| ||||| || | |||||| || ||||||| |||||||| ||||| |||||  || |||| |||||||||||||||||| ||||||||    
T  44214218 cttgctgagaaagctaaggtttccctcacagtcatttctccaatgtgaacatcatgctggctgatataagcagcagttctttgaggtacaaa 44214309  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 359
Target Start/End: Original strand, 44226388 - 44226479
Alignment:
Q  268 cttgcggagaaggccatggtttctctgacagtcaattctccaaggtgaagatcattttgactgacataagcagcagttctttggggtacaaa 359  Q
    ||||| ||||| |||| |||||| || ||||||| ||||||||  |||| ||||| ||| || | ||| |||||||||||||| ||||||||    
T  44226388 cttgctgagaaagccaaggtttccctcacagtcatttctccaatatgaacatcatgttggcttatataggcagcagttctttgaggtacaaa 44226479  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 2901735 - 2901844
Alignment:
Q  253 ccaacgccttggactcttgcggagaaggccatggtttctctgacagtcaattctccaaggtgaagatcattttgactgacataagcagcagttctttggg 352  Q
    ||||||||||||   ||||| ||||| ||||  ||||| || ||||||| ||||||||  |||| ||||| |||||| | ||| |||||||||||||| |    
T  2901735 ccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctttgag 2901834  T
Q  353 gtacaaattc 362  Q
    ||||||||||    
T  2901835 gtacaaattc 2901844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 362
Target Start/End: Complemental strand, 2873075 - 2872981
Alignment:
Q  268 cttgcggagaaggccatggtttctctgacagtcaattctccaaggtgaagatcattttgactgacataagcagcagttctttggggtacaaattc 362  Q
    ||||| ||||| ||||  ||||| || ||||||| ||||||||  |||| ||||| |||||| | ||| |||||||||||||| |||||||||||    
T  2873075 cttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctttgaggtacaaattc 2872981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 362
Target Start/End: Complemental strand, 2883277 - 2883183
Alignment:
Q  268 cttgcggagaaggccatggtttctctgacagtcaattctccaaggtgaagatcattttgactgacataagcagcagttctttggggtacaaattc 362  Q
    ||||| ||||| |||| |||||| || ||||||| ||||||||  |||| ||||| |||||| | ||| ||||||||||| || |||||||||||    
T  2883277 cttgctgagaaagccaaggtttccctcacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctctgaggtacaaattc 2883183  T

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